Rdisop 0.99.3
Steffen Neumann
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Rdisop | | Last Changed Rev: 30759 / Revision: 30951 | | Last Changed Date: 2008-03-31 03:24:47 -0700 (Mon, 31 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pelham | Mac OS X Leopard (10.5.1) / i386 | N O T S U P P O R T E D |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/Rdisop.Rcheck'
* using R version 2.7.0 Under development (unstable) (2008-03-10 r44730)
* using session charset: ISO8859-1
* checking for file 'Rdisop/DESCRIPTION' ... OK
* this is package 'Rdisop' version '0.99.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Rdisop' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating Rdisop-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating Rdisop-manual.tex ... OK
* checking Rdisop-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/Rdisop.Rcheck
---------- Making package Rdisop ------------
Building libRcpp.a in RcppSrc...
g++ -c Rcpp.cpp -o Rcpp.o -I"e:\biocbld\bbs-2.2-bioc\R/include" -I"e:\biocbld\bbs-2.2-bioc\R/src/include" -Wall -O2
Rcpp.cpp: In function 'char* copyMessageToR(const char*)':
Rcpp.cpp:884: warning: deprecated conversion from string constant to 'char*'
ar r libRcpp.a Rcpp.o
ranlib libRcpp.a
rm Rcpp.o
Building imslib.dll in src/imslib...
-rwxr-xr-x 1 biocbuild None 2806048 Dec 8 00:09 src/win/libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Dec 8 00:09 src/win/libims.dll
total 5488
-rwxr-xr-x 1 biocbuild None 2806048 Apr 9 07:18 libims-0.dll
-rwxr-xr-x 1 biocbuild None 2806048 Apr 9 07:18 libims.dll
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making disop.d from disop.cpp
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -I./imslib/src -I../RcppSrc/ -O2 -Wall -c disop.cpp -o disop.o
disop.cpp: In function 'bool isValidMyNitrogenRule(const ims::ComposedElement&, int)':
disop.cpp:120: warning: unused variable 'parityeven'
disop.cpp: In function 'SEXPREC* decomposeIsotopes(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
disop.cpp:205: warning: comparison between signed and unsigned integer expressions
disop.cpp:208: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:216: warning: comparison between signed and unsigned integer expressions
disop.cpp:169: warning: unused variable 'number_molecules_shown'
disop.cpp: In function 'void initializeAlphabet(SEXPREC*, alphabet_t&)':
disop.cpp:726: warning: deprecated conversion from string constant to 'char*'
disop.cpp:727: warning: deprecated conversion from string constant to 'char*'
disop.cpp:729: warning: deprecated conversion from string constant to 'char*'
disop.cpp:731: warning: deprecated conversion from string constant to 'char*'
disop.cpp:732: warning: deprecated conversion from string constant to 'char*'
disop.cpp:733: warning: deprecated conversion from string constant to 'char*'
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i Rdisop_res.rc -o Rdisop_res.o
g++ -shared -s -o Rdisop.dll Rdisop.def disop.o Rdisop_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -L./win -lims -L../RcppSrc/ -lRcpp -lR
Info: resolving ims::IsotopeDistribution::SIZE by linking to __imp___ZN3ims19IsotopeDistribution4SIZEE (auto-import)
Info: resolving ims::IsotopeDistribution::ABUNDANCES_SUM_ERROR by linking to __imp___ZN3ims19IsotopeDistribution20ABUNDANCES_SUM_ERRORE (auto-import)
Info: resolving vtable for ims::Alphabetby linking to __imp___ZTVN3ims8AlphabetE (auto-import)
... DLL made
installing DLL
installing R files
installing inst files
installing man source files
installing indices
installing help
>>> Building/Updating help pages for package 'Rdisop'
Formats: text html latex example chm
RcppVersion text html latex example chm
addMolecules text html latex example chm
decomposeMass text html latex example chm
getMolecule text html latex example chm
initializeCHNOPS text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\Rdisop.Rcheck\00_pkg_src\Rdisop\chm\Rdisop.chm
Compile time: 0 minutes, 0 seconds
6 Topics
24 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\Rdisop.Rcheck\00_pkg_src\Rdisop\chm\Rdisop.chm, 21,253 bytes
Compression decreased file by 1,737 bytes.
adding MD5 sums
* DONE (Rdisop)