GeneticsBase 1.3.2
Gregory Warnes
| Snapshot Date: 2008-04-09 00:13:10 -0700 (Wed, 09 Apr 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GeneticsBase | | Last Changed Rev: 30521 / Revision: 30951 | | Last Changed Date: 2008-03-14 10:49:30 -0700 (Fri, 14 Mar 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | ERROR | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.1) / i386 | ERROR | skipped | skipped |
* checking for file 'GeneticsBase/DESCRIPTION' ... OK
* preparing 'GeneticsBase':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
installing R.css in E:/biocbld/bbs-2.2-bioc/tmpdir/Rinst495635302
---------- Making package GeneticsBase ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
making DLL ...
making LdMax.d from LdMax.cpp
making convert.d from convert.cpp
making getLDdist.d from getLDdist.cpp
making readGenes.ped.d from readGenes.ped.cpp
making register.d from register.cpp
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c LdMax.cpp -o LdMax.o
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c convert.cpp -o convert.o
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c getLDdist.cpp -o getLDdist.o
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c readGenes.ped.cpp -o readGenes.ped.o
g++ -Ie:/biocbld/bbs-2.2-bioc/R/include -O2 -Wall -c register.cpp -o register.o
windres --preprocessor="gcc -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i GeneticsBase_res.rc -o GeneticsBase_res.o
g++ -shared -s -o GeneticsBase.dll GeneticsBase.def LdMax.o convert.o getLDdist.o readGenes.ped.o register.o GeneticsBase_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
installing data files
preparing package GeneticsBase for lazy loading
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
installing man source files
installing indices
Loading required package: methods
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
not zipping data
installing help
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>>> Building/Updating help pages for package 'GeneticsBase'
Formats: text html latex example chm
ALZH text html latex example chm
Armitage text html latex example chm
CAMP text html latex example chm
HWE text html latex example chm
HWE.chisq text html latex example chm
HWE.exact text html latex example chm
LD-class text html latex example chm
LD text html latex example chm
LDband-class text html latex example chm
LDdist-class text html latex chm
PGtables text html latex example chm
PerlgenExample text html latex example chm
PfizerExample text html latex example chm
alleleCount text html latex example chm
alleleLevels text html latex example chm
alleleSummary text html latex example chm
alleles text html latex example chm
as.geneSet text html latex example chm
binsearch text html latex example chm
callCodes text html latex example chm
ci.balance text html latex example chm
convert text html latex example chm
decodeCallCodes text html latex example chm
desMarkers text html latex example chm
description text html latex example chm
diseq text html latex chm
errorMetrics text html latex example chm
extractAlleles text html latex chm
fastGrid text html latex chm
founderGeneSet text html latex example chm
geneSet-class text html latex example chm
geneSet2Ped text html latex example chm
genotypeCoding text html latex example chm
genotypeLevels text html latex example chm
genotypeSummary text html latex example chm
genotypes text html latex example chm
gregorius text html latex example chm
haplo.em.w text html latex example chm
haplo.scan.w text html latex example chm
haplo.score.slide.w text html latex example chm
haplo.score.w text html latex example chm
hapmapchr text html latex example chm
homozygote text html latex example chm
html text html latex example chm
left text html latex example chm
makeMarkerInfo text html latex chm
makeTransTable text html latex chm
makeTransTableList text html latex example chm
markerInfo text html latex example chm
markerNames text html latex example chm
markerSummary text html latex example chm
missingCodes text html latex example chm
nallele text html latex example chm
nmarker text html latex example chm
notes text htmlNote: removing empty section \examples
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latex example chm
ped2geneSet text html latex chm
phase text html latex example chm
ploidy text html latex example chm
print.LD text html latex example chm
qtlex text html latex example chm
read.pfizer text html latex example chm
read.phe text html latex example chm
readGenes text html latex example chm
readGenes.ped text html latex chm
readGenes.perlegen text html latex chm
readGenes.pfizer text html latex example chm
sampleInfo text html latex example chm
studyInfo text html latex example chm
transTables text html latex example chm
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Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\GeneticsBase\chm\GeneticsBase.chm
Compile time: 0 minutes, 2 seconds
71 Topics
269 Local links
8 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\GeneticsBase\chm\GeneticsBase.chm, 106,961 bytes
Compression decreased file by 194,218 bytes.
adding MD5 sums
* DONE (GeneticsBase)
* creating vignettes ... ERROR
Loading required package: combinat
Attaching package: 'combinat'
The following object(s) are masked from package:utils :
combn
Loading required package: xtable
Loading required package: mvtnorm
Loading required package: haplo.stats
Loading required package: gdata
Attaching package: 'gdata'
The following object(s) are masked from package:GeneticsBase :
nobs
Loading required package: gmodels
Loading required package: gtools
Attaching package: 'gtools'
The following object(s) are masked from package:GeneticsBase :
binsearch
Attaching package: 'GeneticsDesign'
The following object(s) are masked from package:GeneticsBase :
gregorius
Loading required package: MASS
Error: processing vignette 'Tutorial.Rnw' failed with diagnostics:
chunk 37
Error in `colnames<-`(`*tmp*`, value = c(0.1, 0.2, 0.3, 0.4, 0.5, 0.6, :
attempt to set colnames on object with less than two dimensions
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted