pairseqsim 1.9.3
Witold Wolski
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/pairseqsim | | Last Changed Rev: 25301 / Revision: 29143 | | Last Changed Date: 2007-06-10 10:22:32 -0700 (Sun, 10 Jun 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | ERROR | skipped | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | [ ERROR ] | skipped | |
| wellington | Linux (openSUSE 10.3) / i686 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| lemming | Windows Server 2003 (32-bit) / x64 | ERROR | skipped | skipped |
* checking for file 'pairseqsim/DESCRIPTION' ... OK
* preparing 'pairseqsim':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking whether 'INDEX' is up-to-date ... NO
* use '--force' to overwrite the existing 'INDEX'
* installing the package to re-build vignettes
/tmp/Rinst3047871950
* Installing *source* package 'pairseqsim' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c align.c -o align.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c basic.c -o basic.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.2-bioc/R/include -I/home/biocbuild/bbs-2.2-bioc/R/include -I/usr/local/include -fpic -g -O2 -Wall -c callalign.c -o callalign.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o pairseqsim.so align.o basic.o callalign.o -L/home/biocbuild/bbs-2.2-bioc/R/lib -lR
** R
** data
** inst
** help
Note: removing empty section \seealso
Note: removing empty section \details
Note: unmatched right brace in 'EPAM110' on or after line 80
Note: removing empty section \format
Note: unmatched right brace in 'Submatrix-class' on or after line 14
Note: removing empty section \details
Note: removing empty section \format
>>> Building/Updating help pages for package 'pairseqsim'
Formats: text html latex example
AAAlignment-class text html latex example
AAAlphabet-class text html latex example
AASequence-class text html latex example
AASequence text html latex example
AASequenceList-class text html latex example
EPAM110 text html latex example
Submatrix-class text html latex
listdist-methods text html latex
readFasta-methods text html latex example
salign-methods text html latex example
sequlist text html latex example
testalign-methods text html latex
** building package indices ...
* DONE (pairseqsim)
* creating vignettes ... ERROR
Creating a new generic function for "levels" in "pairseqsim"
Creating a new generic function for "frequency" in "pairseqsim"
Creating a new generic function for "summary" in "pairseqsim"
Refusing to claim no (or even less memmory ... !