Package: nnNorm

Version: 2.3.0

Command: /home/biocbuild/bbs-2.2-bioc/R/bin/R CMD check nnNorm_2.3.0.tar.gz

StartedAt: 2007-12-11 04:19:38 -0700 (Tue, 11 Dec 2007)

EndedAt: 2007-12-11 04:25:02 -0700 (Tue, 11 Dec 2007)

EllapsedTime: 324.0 seconds

RetCode: 0

Status: OK

CheckDir: nnNorm.Rcheck

Warnings: 0

* checking for working latex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.2-bioc/meat/nnNorm.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-12-06 r43609)
* checking for file 'nnNorm/DESCRIPTION' ... OK
* this is package 'nnNorm' version '2.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'nnNorm' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
maNormNN: no visible binding for global variable ‘decay’
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating nnNorm-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
--- running texi2dvi on vignettes
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './nnNorm.tex' ...
Package natbib Warning: Citation `tarca04' on page 1 undefined on input line 43
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './nnNorm.tex' ...
Package natbib Warning: Citation `tarca04' on page 1 undefined on input line 43
/usr/bin/texi2dvi: Running pdflatex --file-line-error </dev/null '\nonstopmode' '\input' './nnNorm.tex' ...
* creating nnNorm-manual.tex ... OK
* checking nnNorm-manual.tex ... OK

/loc/home/biocbuild/bbs-2.2-bioc/meat/nnNorm.Rcheck
* Installing *source* package 'nnNorm' ...
** R
** inst
** help
Note: unmatched right brace in 'detectSpatialBias' on or after line 32
Note: unmatched right brace in 'maNormNN' on or after line 52
 >>> Building/Updating help pages for package 'nnNorm'
     Formats: text html latex example 
  compNorm                          text    html    latex   example
  detectSpatialBias                 text    html    latex   example
  maNormNN                          text    html    latex   example
** building package indices ...
* DONE (nnNorm)