VanillaICE 1.1.3
Robert Scharpf
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/VanillaICE | | Last Changed Rev: 28928 / Revision: 29143 | | Last Changed Date: 2007-11-27 07:23:14 -0800 (Tue, 27 Nov 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | OK | OK |
* checking for file 'VanillaICE/DESCRIPTION' ... OK
* preparing 'VanillaICE':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
/tmp/Rinst1909665768
* Installing *source* package 'VanillaICE' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: SNPchip
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
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'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: oligoClasses
** help
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>>> Building/Updating help pages for package 'VanillaICE'
Formats: text html latex example
HmmSnpCallSet-class text html latex example
HmmSnpCopyNumberSet-class text html latex example
HmmSnpSet-class text html latex example
ParHSet-class text html latex example
ParHmmSnpCallSet-class text html latex example
ParHmmSnpCopyNumberSet-class text html latex example
ParHmmSnpSet-class text html latex example
bind text html latex
breakpoints text html latex example
byArm text html latex
calculateEmissionProbability text html latex
callEmission text html latex example
callsIce text html latex
chromosome1 text html latex example
chromosomeArm text html latex
copyNumberIce text html latex
distance text html latex
emissionProbability text html latex
getCallEmission text html latex
getCopyNumberLocation text html latex
getCopyNumberScale text html latex
getHapmapProbabilities text html latex
getInitialStateProbability text html latex example
getLohProbability text html latex
getTransitionProbability text html latex
hSet-class text html latex example
hapmapProbabilities text html latex
hmm text html latex example
hmmBySample text html latex
initialStateProbability text html latex
isMissing text html latex
likelihood text html latex
locationCopyNumber text html latex
numberStates text html latex
pCHOM text html latex example
plotPredictions text html latex
predictions text html latex
scaleCopyNumber text html latex
stateNames text html latex
transitionProbability text html latex
viterbi text html latex
** building package indices ...
* DONE (VanillaICE)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'VanillaICE_1.1.3.tar.gz'