BufferedMatrix 1.3.0
Benjamin Milo Bolstad
| Snapshot Date: 2007-12-11 00:09:07 -0800 (Tue, 11 Dec 2007) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BufferedMatrix | | Last Changed Rev: 27716 / Revision: 29143 | | Last Changed Date: 2007-10-02 18:16:39 -0700 (Tue, 02 Oct 2007) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | ERROR | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | ERROR | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | ERROR | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | OK |
| lemming | Windows Server 2003 (32-bit) / x64 | OK | ERROR | OK |
* checking for working latex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/BufferedMatrix.Rcheck'
* using R version 2.7.0 Under development (unstable) (2007-11-14 r43455)
* checking for file 'BufferedMatrix/DESCRIPTION' ... OK
* this is package 'BufferedMatrix' version '1.3.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BufferedMatrix' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating BufferedMatrix-Ex.R ... OK
* checking examples ... OK
* checking tests ...
make[1]: Entering directory `/cygdrive/e/biocbld/bbs-2.2-bioc/meat/BufferedMatrix.Rcheck/tests'
Running 'Rcodetesting.R'
Running 'c_code_level_tests.R'
Running 'objectTesting.R'
make[1]: *** [objectTesting.Rout] Error 1
make[1]: Leaving directory `/cygdrive/e/biocbld/bbs-2.2-bioc/meat/BufferedMatrix.Rcheck/tests'
make: *** [all] Error 2
ERROR
Running the tests in 'tests/objectTesting.R' failed.
Last 13 lines of output:
+ agree.checks(tmp5,copymatrix)
+
+ ### now make 1 element non NA with NA in the rest of row and column
+
+ tmp5[which.row,which.col] <- rnorm(1,150,15)
+ copymatrix[which.row,which.col] <- tmp5[which.row,which.col]
+
+ agree.checks(tmp5,copymatrix)
+ }
1 16
Error in FUN(newX[, i], ...) : no complete element pairs
Calls: agree.checks -> apply -> FUN
Execution halted
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/BufferedMatrix.Rcheck
---------- Making package BufferedMatrix ------------
adding build stamp to DESCRIPTION
making DLL ...
making RBufferedMatrix.d from RBufferedMatrix.c
making doubleBufferedMatrix.d from doubleBufferedMatrix.c
making doubleBufferedMatrix_C_tests.d from doubleBufferedMatrix_C_tests.c
making init_package.d from init_package.c
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c RBufferedMatrix.c -o RBufferedMatrix.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c doubleBufferedMatrix.c -o doubleBufferedMatrix.o
doubleBufferedMatrix.c:3327: warning: 'sort_double' defined but not used
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c doubleBufferedMatrix_C_tests.c -o doubleBufferedMatrix_C_tests.o
gcc-sjlj -std=gnu99 -Ie:/biocbld/bbs-2.2-bioc/R/include -O3 -Wall -c init_package.c -o init_package.o
windres --preprocessor="gcc-sjlj -E -xc -DRC_INVOKED" -I e:/biocbld/bbs-2.2-bioc/R/include -i BufferedMatrix_res.rc -o BufferedMatrix_res.o
gcc-sjlj -std=gnu99 -shared -s -o BufferedMatrix.dll BufferedMatrix.def RBufferedMatrix.o doubleBufferedMatrix.o doubleBufferedMatrix_C_tests.o init_package.o BufferedMatrix_res.o -Le:/biocbld/bbs-2.2-bioc/R/bin -lR
... DLL made
installing DLL
installing R files
installing inst files
preparing package BufferedMatrix for lazy loading
Creating a new generic function for "ncol" in "BufferedMatrix"
Creating a new generic function for "nrow" in "BufferedMatrix"
Creating a new generic function for "mean" in "BufferedMatrix"
Creating a new generic function for "as.matrix" in "BufferedMatrix"
installing man source files
installing indices
installing help
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
Note: ignoring empty \keyword entries
Note: removing empty section \value
Note: removing empty section \details
Note: removing empty section \references
Note: removing empty section \examples
Note: removing empty section \seealso
>>> Building/Updating help pages for package 'BufferedMatrix'
Formats: text html latex example chm
BufferedMatrix-class text html latex chm
as.BufferedMatrix text html latex chm
createBufferedMatrix text html latex chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\BufferedMatrix.Rcheck\00_pkg_src\BufferedMatrix\chm\BufferedMatrix.chm
Compile time: 0 minutes, 0 seconds
4 Topics
105 Local links
0 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\BufferedMatrix.Rcheck\00_pkg_src\BufferedMatrix\chm\BufferedMatrix.chm, 23,551 bytes
Compression decreased file by 30,853 bytes.
adding MD5 sums
* DONE (BufferedMatrix)