BioC experimental data: CHECK report for phastCons100way.UCSC.hg19 on moscato2

Package: phastCons100way.UCSC.hg19

Version: 1.0.0

Command: rm -rf phastCons100way.UCSC.hg19.buildbin-libdir && mkdir phastCons100way.UCSC.hg19.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=phastCons100way.UCSC.hg19.buildbin-libdir phastCons100way.UCSC.hg19_1.0.0.tar.gz >phastCons100way.UCSC.hg19-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=phastCons100way.UCSC.hg19.buildbin-libdir --install="check:phastCons100way.UCSC.hg19-install.out" --force-multiarch --no-vignettes --timings phastCons100way.UCSC.hg19_1.0.0.tar.gz && mv phastCons100way.UCSC.hg19.buildbin-libdir/* phastCons100way.UCSC.hg19.Rcheck/ && rmdir phastCons100way.UCSC.hg19.buildbin-libdir

StartedAt: 2014-04-15 14:31:55 -0700 (Tue, 15 Apr 2014)

EndedAt: 2014-04-15 14:44:09 -0700 (Tue, 15 Apr 2014)

EllapsedTime: 733.8 seconds

RetCode: 0

Status:  OK

CheckDir: phastCons100way.UCSC.hg19.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/phastCons100way.UCSC.hg19.Rcheck'
* using R version 3.1.0 RC (2014-04-02 r65358)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'phastCons100way.UCSC.hg19/DESCRIPTION' ... OK
* this is package 'phastCons100way.UCSC.hg19' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'phastCons100way.UCSC.hg19' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 229.8Mb
  sub-directories of 1Mb or more:
    extdata  229.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [24s] OK
** running examples for arch 'x64' ... [27s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-data-experiment/meat/phastCons100way.UCSC.hg19.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'phastCons100way.UCSC.hg19' ...
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.

install for x64

* installing *source* package 'phastCons100way.UCSC.hg19' ...
** testing if installed package can be loaded
Note: the specification for S3 class "AsIs" in package 'RJSONIO' seems equivalent to one from package 'BiocGenerics': not turning on duplicate class definitions for this class.
* MD5 sums
packaged installation of 'phastCons100way.UCSC.hg19' as phastCons100way.UCSC.hg19_1.0.0.zip
* DONE (phastCons100way.UCSC.hg19)

name	user	system	elapsed
phastCons100way.UCSC.hg19-package	0.37	0.00	0.38

name	user	system	elapsed
phastCons100way.UCSC.hg19-package	0.41	0.00	0.40