BioC experimental data: CHECK report for miRNATarget on petty

Package: miRNATarget

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_1.2.0.tar.gz

StartedAt: 2014-10-04 09:28:53 -0700 (Sat, 04 Oct 2014)

EndedAt: 2014-10-04 09:30:15 -0700 (Sat, 04 Oct 2014)

EllapsedTime: 81.4 seconds

RetCode: 0

Status:  OK

CheckDir: miRNATarget.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch miRNATarget_1.2.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRNATarget/DESCRIPTION’ ... OK
* this is package ‘miRNATarget’ version ‘1.2.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.goutputstream-8N717W
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRNATarget’ can be installed ... [3s/9s] OK
* checking installed package size ... NOTE
  installed size is 59.6Mb
  sub-directories of 1Mb or more:
    data  59.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [20s/22s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/miRNATarget.Rcheck/00check.log’
for details.

* installing *source* package ‘miRNATarget’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRNATarget)

name	user	system	elapsed
HS_conv_id	0.029	0.003	0.031
HS_refseq_to_affy_hc_g110	0.010	0.001	0.010
HS_refseq_to_affy_hg_focus	0.029	0.001	0.030
HS_refseq_to_affy_hg_u133_plus_2	0.089	0.003	0.093
HS_refseq_to_affy_hg_u133a	0.059	0.002	0.061
HS_refseq_to_affy_hg_u133a_2	0.058	0.001	0.058
HS_refseq_to_affy_hg_u133b	0.031	0.001	0.032
HS_refseq_to_affy_hg_u95a	0.035	0.001	0.036
HS_refseq_to_affy_hg_u95av2	0.034	0.001	0.035
HS_refseq_to_affy_hg_u95b	0.024	0.001	0.025
HS_refseq_to_affy_hg_u95c	0.017	0.001	0.017
HS_refseq_to_affy_hg_u95d	0.012	0.001	0.014
HS_refseq_to_affy_hg_u95e	0.016	0.000	0.017
HS_refseq_to_affy_huex_1_0_st_v2	2.154	0.044	2.199
HS_refseq_to_affy_hugene_1_0_st_v1	0.072	0.002	0.074
HS_refseq_to_affy_hugenefl	0.022	0.001	0.023
HS_refseq_to_affy_u133_x3p	0.151	0.003	0.153
HS_refseq_to_agilent_cgh_44b	0.020	0.000	0.021
HS_refseq_to_agilent_wholegenome	0.242	0.014	0.256
HS_refseq_to_canonical_transcript_stable_id	0.090	0.012	0.102
HS_refseq_to_ccds	0.052	0.002	0.054
HS_refseq_to_codelink	0.051	0.002	0.053
HS_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.006	0.001	0.007
HS_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.004	0.001	0.005
HS_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.004	0.001	0.005
HS_refseq_to_embl	0.945	0.019	0.964
HS_refseq_to_ensembl_exon_id	0.004	0.000	0.004
HS_refseq_to_ensembl_gene_id	0.075	0.000	0.075
HS_refseq_to_ensembl_peptide_id	0.071	0.001	0.072
HS_refseq_to_ensembl_transcript_id	0.209	0.006	0.214
HS_refseq_to_entrezgene	0.076	0.001	0.077
HS_refseq_to_hgnc_id	0.071	0.000	0.071
HS_refseq_to_hgnc_symbol	0.077	0.001	0.078
HS_refseq_to_hgnc_transcript_name	0.076	0.002	0.078
HS_refseq_to_illumina_humanht_12	0.080	0.002	0.082
HS_refseq_to_illumina_humanwg_6_v1	0.069	0.001	0.070
HS_refseq_to_illumina_humanwg_6_v2	0.060	0.001	0.062
HS_refseq_to_illumina_humanwg_6_v3	0.077	0.002	0.078
HS_refseq_to_interpro	0.272	0.008	0.280
HS_refseq_to_ipi	0.225	0.015	0.240
HS_refseq_to_merops	0.008	0.001	0.008
HS_refseq_to_pdb	0.135	0.002	0.137
HS_refseq_to_pfam	0.106	0.002	0.108
HS_refseq_to_phalanx_onearray	0.067	0.001	0.068
HS_refseq_to_protein_id	1.811	0.027	1.838
HS_refseq_to_refseq_dna	0.078	0.006	0.083
HS_refseq_to_refseq_genomic	0.003	0.000	0.003
HS_refseq_to_refseq_peptide	0.133	0.001	0.134
HS_refseq_to_rfam	0.056	0.001	0.057
HS_refseq_to_rfam_gene_name	0.003	0.001	0.003
HS_refseq_to_rfam_transcript_name	0.003	0.000	0.003
HS_refseq_to_smart	0.056	0.000	0.056
HS_refseq_to_tigrfam	0.008	0.000	0.009
HS_refseq_to_ucsc	0.139	0.002	0.141
HS_refseq_to_unigene	0.292	0.004	0.297
HS_refseq_to_uniprot_genename	0.056	0.001	0.058
HS_refseq_to_uniprot_genename_transcript_name	0.004	0.001	0.005
HS_refseq_to_uniprot_sptrembl	0.004	0.000	0.004
HS_refseq_to_uniprot_swissprot	0.004	0.000	0.004
HS_refseq_to_uniprot_swissprot_accession	0.003	0.001	0.004
HS_refseq_to_wikigene_id	0.004	0.001	0.005
HS_refseq_to_wikigene_name	0.064	0.001	0.064
MM_conv_id	0.004	0.000	0.005
MM_refseq_to_affy_mg_u74a	0.024	0.001	0.024
MM_refseq_to_affy_mg_u74av2	0.022	0.001	0.023
MM_refseq_to_affy_mg_u74b	0.016	0.000	0.017
MM_refseq_to_affy_mg_u74bv2	0.018	0.000	0.019
MM_refseq_to_affy_mg_u74c	0.007	0.001	0.008
MM_refseq_to_affy_mg_u74cv2	0.009	0.001	0.010
MM_refseq_to_affy_moe430a	0.047	0.001	0.047
MM_refseq_to_affy_moe430b	0.020	0.000	0.021
MM_refseq_to_affy_moex_1_0_st_v1	0.509	0.004	0.513
MM_refseq_to_affy_mogene_1_0_st_v1	0.053	0.001	0.055
MM_refseq_to_affy_mouse430_2	0.061	0.001	0.062
MM_refseq_to_affy_mouse430a_2	0.044	0.001	0.045
MM_refseq_to_affy_mu11ksuba	0.020	0.001	0.021
MM_refseq_to_affy_mu11ksubb	0.013	0.001	0.013
MM_refseq_to_agilent_wholegenome	0.082	0.005	0.087
MM_refseq_to_canonical_transcript_stable_id	0.081	0.005	0.086
MM_refseq_to_ccds	0.044	0.001	0.046
MM_refseq_to_codelink	0.046	0.002	0.048
MM_refseq_to_efg_agilent_sureprint_g3_ge_8x60k	0.004	0.001	0.005
MM_refseq_to_efg_agilent_wholegenome_4x44k_v1	0.005	0.001	0.006
MM_refseq_to_efg_agilent_wholegenome_4x44k_v2	0.090	0.006	0.096
MM_refseq_to_embl	0.415	0.006	0.421
MM_refseq_to_ensembl_exon_id	0.004	0.001	0.004
MM_refseq_to_ensembl_gene_id	0.051	0.001	0.052
MM_refseq_to_ensembl_peptide_id	0.050	0.002	0.053
MM_refseq_to_ensembl_transcript_id	0.055	0.002	0.056
MM_refseq_to_entrezgene	0.045	0.001	0.047
MM_refseq_to_fantom	0.224	0.003	0.226
MM_refseq_to_illumina_mousewg_6_v1	0.081	0.001	0.082
MM_refseq_to_illumina_mousewg_6_v2	0.069	0.001	0.070
MM_refseq_to_interpro	0.146	0.003	0.149
MM_refseq_to_ipi	0.003	0.000	0.004
MM_refseq_to_merops	0.006	0.000	0.007
MM_refseq_to_mgi_id	0.242	0.002	0.244
MM_refseq_to_mgi_symbol	0.047	0.001	0.048
MM_refseq_to_mgi_transcript_name	0.052	0.001	0.066
MM_refseq_to_pdb	0.014	0.001	0.015
MM_refseq_to_pfam	0.082	0.001	0.082
MM_refseq_to_phalanx_onearray	0.046	0.001	0.047
MM_refseq_to_protein_id	0.649	0.005	0.654
MM_refseq_to_refseq_dna	0.067	0.004	0.072
MM_refseq_to_refseq_peptide	0.094	0.001	0.095
MM_refseq_to_rfam	0.006	0.001	0.006
MM_refseq_to_rfam_gene_name	0.004	0.000	0.005
MM_refseq_to_rfam_transcript_name	0.003	0.000	0.003
MM_refseq_to_smart	0.041	0.001	0.042
MM_refseq_to_tigrfam	0.010	0.001	0.011
MM_refseq_to_ucsc	0.049	0.001	0.049
MM_refseq_to_unigene	0.064	0.001	0.066
MM_refseq_to_uniprot_genename	0.046	0.001	0.047
MM_refseq_to_uniprot_genename_transcript_name	0.004	0.001	0.005
MM_refseq_to_uniprot_sptrembl	0.004	0.001	0.004
MM_refseq_to_uniprot_swissprot	0.004	0.000	0.004
MM_refseq_to_uniprot_swissprot_accession	0.004	0.000	0.004
MM_refseq_to_wikigene_id	0.003	0.001	0.004
MM_refseq_to_wikigene_name	0.047	0.001	0.048
TBL2	1.368	0.166	1.535
TBL2_HS	2.059	0.282	2.342
TBL2_MM	1.153	0.183	1.336
conv_id	0.004	0.000	0.005
id_conv	0.045	0.001	0.047