PWMEnrich.Dmelanogaster.background 2.2.0
Robert Stojnic
| Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/PWMEnrich.Dmelanogaster.background | | Last Changed Rev: 2799 / Revision: 3055 | | Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | [ WARNINGS ] | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | WARNINGS | OK |
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### Running command:
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### rm -rf PWMEnrich.Dmelanogaster.background.buildbin-libdir && mkdir PWMEnrich.Dmelanogaster.background.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PWMEnrich.Dmelanogaster.background.buildbin-libdir PWMEnrich.Dmelanogaster.background_2.2.0.tar.gz >PWMEnrich.Dmelanogaster.background-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=PWMEnrich.Dmelanogaster.background.buildbin-libdir --install="check:PWMEnrich.Dmelanogaster.background-install.out" --force-multiarch --no-vignettes --timings PWMEnrich.Dmelanogaster.background_2.2.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-data-experiment/meat/PWMEnrich.Dmelanogaster.background.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PWMEnrich.Dmelanogaster.background/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PWMEnrich.Dmelanogaster.background' version '2.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PWMEnrich.Dmelanogaster.background' can be installed ... OK
* checking installed package size ... NOTE
installed size is 68.5Mb
sub-directories of 1Mb or more:
data 68.5Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
MotifDb.Dmel.PFM.RData 35Kb 24Kb bzip2
MotifDb.Dmel.RData 154Kb 106Kb xz
PWMCutoff4.dm3.MotifDb.Dmel.RData 164Kb 110Kb xz
PWMCutoff5.dm3.MotifDb.Dmel.RData 164Kb 110Kb xz
PWMGEV.dm3.MotifDb.Dmel.RData 67.3Mb 56.6Mb xz
PWMLogn.dm3.MotifDb.Dmel.RData 171Kb 116Kb xz
PWMPvalueCutoff1e2.dm3.MotifDb.Dmel.RData 169Kb 114Kb xz
PWMPvalueCutoff1e3.dm3.MotifDb.Dmel.RData 169Kb 114Kb xz
PWMPvalueCutoff1e4.dm3.MotifDb.Dmel.RData 168Kb 113Kb xz
* checking examples ...
** running examples for arch 'i386' ... [6s] OK
** running examples for arch 'x64' ... [6s] OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There was 1 note.
See
'E:/biocbld/bbs-2.14-data-experiment/meat/PWMEnrich.Dmelanogaster.background.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'PWMEnrich.Dmelanogaster.background' ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
install for x64
* installing *source* package 'PWMEnrich.Dmelanogaster.background' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PWMEnrich.Dmelanogaster.background' as PWMEnrich.Dmelanogaster.background_2.2.0.zip
* DONE (PWMEnrich.Dmelanogaster.background)
PWMEnrich.Dmelanogaster.background.Rcheck/examples_i386/PWMEnrich.Dmelanogaster.background-Ex.timings:
PWMEnrich.Dmelanogaster.background.Rcheck/examples_x64/PWMEnrich.Dmelanogaster.background-Ex.timings: