BioC experimental data: CHECK report for COSMIC.67 on petty
This page was generated on 2014-10-04 17:43:48 -0700 (Sat, 04 Oct 2014).
COSMIC.67 1.0.0 Julian Gehring
Snapshot Date: 2014-10-04 07:15:22 -0700 (Sat, 04 Oct 2014) | URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_2_14/experiment/pkgs/COSMIC.67 | Last Changed Rev: 2799 / Revision: 3055 | Last Changed Date: 2014-04-11 14:27:08 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | OK | OK |
petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | [ OK ] | OK |
Summary
Package: COSMIC.67 |
Version: 1.0.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch COSMIC.67_1.0.0.tar.gz |
StartedAt: 2014-10-04 09:02:01 -0700 (Sat, 04 Oct 2014) |
EndedAt: 2014-10-04 09:07:51 -0700 (Sat, 04 Oct 2014) |
EllapsedTime: 350.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: COSMIC.67.Rcheck |
Warnings: 0 |
Command output
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch COSMIC.67_1.0.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-2.14-data-experiment/meat/COSMIC.67.Rcheck’
* using R version 3.1.1 (2014-07-10)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘COSMIC.67/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘COSMIC.67’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘COSMIC.67’ can be installed ... [25s/26s] OK
* checking installed package size ... NOTE
installed size is 39.3Mb
sub-directories of 1Mb or more:
data 16.6Mb
vcf 22.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
'BiocParallel' did not register default BiocParallelParams
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [35s/35s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
COSMIC.67-package 21.496 0.473 22.344
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running ‘test_all.R’ [13s/13s]
[13s/13s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
‘/Users/biocbuild/bbs-2.14-data-experiment/meat/COSMIC.67.Rcheck/00check.log’
for details.
COSMIC.67.Rcheck/00install.out:
* installing *source* package ‘COSMIC.67’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (COSMIC.67)
COSMIC.67.Rcheck/COSMIC.67-Ex.timings:
name | user | system | elapsed
|
COSMIC.67-package | 21.496 | 0.473 | 22.344 |
|