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BioC 2.14: BUILD report for networkBMA on morelia

This page was generated on 2014-10-08 09:05:42 -0700 (Wed, 08 Oct 2014).

Package 534/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
networkBMA 1.6.0
Ka Yee Yeung
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/networkBMA
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  WARNINGS 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  WARNINGS  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded [ ERROR ] skipped  skipped 

Summary

Package: networkBMA
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data networkBMA
StartedAt: 2014-10-07 19:59:08 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 19:59:19 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 10.8 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data networkBMA
###
##############################################################################
##############################################################################


* checking for file ‘networkBMA/DESCRIPTION’ ... OK
* preparing ‘networkBMA’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘networkBMA’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RcppEigen/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RcppArmadillo/include" -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/RcppEigen/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c ScanBMA_full.cpp -o ScanBMA_full.o
ScanBMA_full.cpp:141:8: error: no member named 'tr1' in namespace 'std'
  std::tr1::unordered_set<std::string> checkedModels;
  ˜˜˜˜˜^
ScanBMA_full.cpp:141:38: error: expected '(' for function-style cast or type construction
  std::tr1::unordered_set<std::string> checkedModels;
                          ˜˜˜˜˜˜˜˜˜˜˜^
ScanBMA_full.cpp:141:40: error: use of undeclared identifier 'checkedModels'
  std::tr1::unordered_set<std::string> checkedModels;
                                       ^
ScanBMA_full.cpp:142:3: error: use of undeclared identifier 'checkedModels'
  checkedModels.insert("");
  ^
ScanBMA_full.cpp:174:20: error: use of undeclared identifier 'checkedModels'
        if ( ((int)checkedModels.count(mString)) < 1 ) {
                   ^
ScanBMA_full.cpp:183:11: error: use of undeclared identifier 'checkedModels'
          checkedModels.insert(mString);
          ^
ScanBMA_full.cpp:276:32: error: use of undeclared identifier 'checkedModels'
  ret["nmodelschecked"] = (int)checkedModels.size();
                               ^
ScanBMA_full.cpp:279:3: error: use of undeclared identifier 'checkedModels'
  checkedModels.clear();
  ^
ScanBMA_full.cpp:427:8: error: no member named 'tr1' in namespace 'std'
  std::tr1::unordered_set<std::string> checkedModels;
  ˜˜˜˜˜^
ScanBMA_full.cpp:427:38: error: expected '(' for function-style cast or type construction
  std::tr1::unordered_set<std::string> checkedModels;
                          ˜˜˜˜˜˜˜˜˜˜˜^
ScanBMA_full.cpp:427:40: error: use of undeclared identifier 'checkedModels'
  std::tr1::unordered_set<std::string> checkedModels;
                                       ^
ScanBMA_full.cpp:428:3: error: use of undeclared identifier 'checkedModels'
  checkedModels.insert("");
  ^
ScanBMA_full.cpp:460:20: error: use of undeclared identifier 'checkedModels'
        if ( ((int)checkedModels.count(mString)) < 1 ) {
                   ^
ScanBMA_full.cpp:470:11: error: use of undeclared identifier 'checkedModels'
          checkedModels.insert(mString);
          ^
ScanBMA_full.cpp:563:32: error: use of undeclared identifier 'checkedModels'
  ret["nmodelschecked"] = (int)checkedModels.size();
                               ^
ScanBMA_full.cpp:566:3: error: use of undeclared identifier 'checkedModels'
  checkedModels.clear();
  ^
16 errors generated.
make: *** [ScanBMA_full.o] Error 1
ERROR: compilation failed for package ‘networkBMA’
* removing ‘/private/tmp/Rtmpy4xIH5/Rinstb907c2e4a62/networkBMA’
      -----------------------------------
ERROR: package installation failed