nem 2.38.0
Holger Froehlich
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/nem | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/nem_2.38.0.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch nem_2.38.0.tar.gz && rm nem_2.38.0.tar.gz
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install for i386
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'nem' ...
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c MCMC.c -o MCMC.o
MCMC.c: In function 'network_likelihood':
MCMC.c:116:41: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c:125:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c: In function 'MCMCrun':
MCMC.c:403:10: warning: unused variable 'stored2' [-Wunused-variable]
MCMC.c:402:10: warning: unused variable 'stored' [-Wunused-variable]
MCMC.c:359:35: warning: unused variable 'mutinf' [-Wunused-variable]
MCMC.c: In function 'network_likelihood':
MCMC.c:108:6: warning: 'max_loglik0_idx' may be used uninitialized in this function [-Wuninitialized]
MCMC.c: In function 'MCMCrun':
MCMC.c:455:24: warning: 'delta_poss_operations' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:28:48: warning: 'logPrior_cur' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:407:24: note: 'logPrior_cur' was declared here
MCMC.c:28:20: warning: 'likelihood' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:407:12: note: 'likelihood' was declared here
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c netlearn.c -o netlearn.o
netlearn.c: In function 'learn_network':
netlearn.c:168:9: warning: unused variable 'lik_switch' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c wrapper.c -o wrapper.o
wrapper.c: In function 'MCMCrunWrapper':
wrapper.c:107:5: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m32 -shared -s -static-libgcc -o nem.dll tmp.def MCMC.o netlearn.o wrapper.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/nem/libs/i386
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'nem' ...
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c MCMC.c -o MCMC.o
MCMC.c: In function 'network_likelihood':
MCMC.c:116:41: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c:125:6: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
MCMC.c: In function 'MCMCrun':
MCMC.c:403:10: warning: unused variable 'stored2' [-Wunused-variable]
MCMC.c:402:10: warning: unused variable 'stored' [-Wunused-variable]
MCMC.c:359:35: warning: unused variable 'mutinf' [-Wunused-variable]
MCMC.c: In function 'network_likelihood':
MCMC.c:108:6: warning: 'max_loglik0_idx' may be used uninitialized in this function [-Wuninitialized]
MCMC.c: In function 'MCMCrun':
MCMC.c:455:24: warning: 'delta_poss_operations' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:455:10: warning: 'logPrior_cur' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:455:10: warning: 'logPriorOld' may be used uninitialized in this function [-Wuninitialized]
MCMC.c:455:10: warning: 'likelihood' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c netlearn.c -o netlearn.o
netlearn.c: In function 'learn_network':
netlearn.c:168:9: warning: unused variable 'lik_switch' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c wrapper.c -o wrapper.o
wrapper.c: In function 'MCMCrunWrapper':
wrapper.c:107:5: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
gcc -m64 -shared -s -static-libgcc -o nem.dll tmp.def MCMC.o netlearn.o wrapper.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/nem/libs/x64
** testing if installed package can be loaded
* DONE (nem)