BioC 2.14: CHECK report for imageHTS on moscato2

Package: imageHTS

Version: 1.14.1

Command: E:\biocbld\bbs-2.14-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.14.1.tar.gz

StartedAt: 2014-10-08 02:14:32 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 02:19:29 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 296.3 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

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### Running command:
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###   E:\biocbld\bbs-2.14-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.14.1.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/imageHTS.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.14.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [21s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [105s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 33.77   1.16   34.96
countObjects    16.30   0.46   16.82
segmentWells     8.71   0.57    9.26
segmentYeastBF   6.04   0.57    6.62
getWellFeatures  5.43   0.01    5.46
fileHTS          3.48   0.00    5.10
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.14-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	16.30	0.46	16.82
extractFeatures	33.77	1.16	34.96
fileHTS	3.48	0.00	5.10
getImageConf	2.08	0.00	2.07
getUnames	4.77	0.00	4.78
getWellFeatures	5.43	0.01	5.46
highlightSegmentation	0	0	0
installCellPicker	2.62	0.00	2.64
makeCellHTS	0	0	0
parseDCF	0	0	0
parseImageConf	1.74	0.00	1.74
popCellPicker	1.69	0.00	1.69
prw2uname	0	0	0
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	8.71	0.57	9.26
segmentYeastBF	6.04	0.57	6.62
summarizeWells	0	0	0
zprime	4.44	0.00	4.44