h5vc 1.4.0
Paul Theodor Pyl
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/h5vc | | Last Changed Rev: 91797 / Revision: 95116 | | Last Changed Date: 2014-06-24 07:41:53 -0700 (Tue, 24 Jun 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/h5vc_1.4.0.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch h5vc_1.4.0.tar.gz && rm h5vc_1.4.0.tar.gz
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install for i386
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'h5vc' ...
** libs
g++ -m32 -I"E:/biocbld/bbs-2.14-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -IE:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/include -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c tallyBAM.cpp -o tallyBAM.o
tallyBAM.cpp: In function 'int pileup_func(uint32_t, uint32_t, int, const bam_pileup1_t*, void*)':
tallyBAM.cpp:46:7: warning: unused variable 'len' [-Wunused-variable]
tallyBAM.cpp: In function 'int _tallyBAM(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*)':
tallyBAM.cpp:81:6: warning: unused variable 'c' [-Wunused-variable]
g++ -m32 -shared -s -static-libgcc -o h5vc.dll tmp.def tallyBAM.o E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/i386/libbam.a E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/i386/libbam.a E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/i386/libbcf.a E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/i386/libtabix.a -lws2_32 -pthread -LE:/biocbld/bbs-2.14-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/h5vc/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
'h5vc.simple.genome.browser.Rmd'
'h5vc.tour.Rmd'
** testing if installed package can be loaded
install for x64
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'h5vc' ...
** libs
g++ -m64 -I"E:/biocbld/bbs-2.14-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -IE:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/include -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c tallyBAM.cpp -o tallyBAM.o
tallyBAM.cpp: In function 'int pileup_func(uint32_t, uint32_t, int, const bam_pileup1_t*, void*)':
tallyBAM.cpp:46:7: warning: unused variable 'len' [-Wunused-variable]
tallyBAM.cpp: In function 'int _tallyBAM(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*)':
tallyBAM.cpp:81:6: warning: unused variable 'c' [-Wunused-variable]
g++ -m64 -shared -s -static-libgcc -o h5vc.dll tmp.def tallyBAM.o E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/x64/libbam.a E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/x64/libbam.a E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/x64/libbcf.a E:/biocbld/bbs-2.14-bioc/R/library/Rsamtools/usrlib/x64/libtabix.a -lws2_32 -pthread -LE:/biocbld/bbs-2.14-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/h5vc/libs/x64
** testing if installed package can be loaded
* DONE (h5vc)