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BioC 2.14: BUILD BIN report for genoset on petty

This page was generated on 2014-10-08 08:59:30 -0700 (Wed, 08 Oct 2014).

Package 341/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genoset 1.16.2
Peter M. Haverty
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/genoset
Last Changed Rev: 89646 / Revision: 95116
Last Changed Date: 2014-04-29 11:27:54 -0700 (Tue, 29 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: genoset
Version: 1.16.2
Command: rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh genoset_1.16.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R genoset.buildbin-libdir
StartedAt: 2014-10-08 01:22:43 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 01:23:23 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 40.0 seconds
RetCode: 0
Status:  OK 
PackageFile: genoset_1.16.2.tgz
PackageFileSize: 639.2 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf genoset.buildbin-libdir && mkdir genoset.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh genoset_1.16.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R genoset.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=genoset.buildbin-libdir genoset_1.16.2.tar.gz'
>>>>>>> 

* installing *source* package ‘genoset’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c genoset.c -o genoset.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o genoset.so genoset.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/genoset.buildbin-libdir/genoset/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genoset)


>>>>>>> 
>>>>>>> FIXING LINKS FOR genoset.buildbin-libdir/genoset/libs//genoset.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "genoset.buildbin-libdir/genoset/libs//genoset.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.2.dylib" "genoset.buildbin-libdir/genoset/libs//genoset.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "genoset.buildbin-libdir/genoset/libs//genoset.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "genoset.buildbin-libdir/genoset/libs//genoset.so"