genefilter 1.46.1
Bioconductor Package Maintainer
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/genefilter | | Last Changed Rev: 90176 / Revision: 95116 | | Last Changed Date: 2014-05-09 15:54:26 -0700 (Fri, 09 May 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | WARNINGS | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | [ OK ] | OK | WARNINGS | OK |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genefilter
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘genefilter’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c half_range_mode.cpp -o half_range_mode.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c nd.c -o nd.o
nd.c:242:12: warning: unused variable 'w1' [-Wunused-variable]
double w1, w2; /* Weighted values */
^
nd.c:242:16: warning: unused variable 'w2' [-Wunused-variable]
double w1, w2; /* Weighted values */
^
2 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c pAUC.c -o pAUC.o
pAUC.c:73:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
ta = ta += ((x[i]-(*p))*(y[i]-y[i-1])/2) + ((x[i]-(*p))*y[i-1]);
˜ ^
pAUC.c:76:12: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
ta = ta += ((x[i]-x[i-1])*(y[i]-y[i-1])/2) + ((x[i]-x[i-1])*y[i-1]);
˜ ^
pAUC.c:79:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
ta = ta += ((1-x[i-1])*(1-y[i-1])/2) + ((1-x[i-1])*y[i-1]);
˜ ^
pAUC.c:123:9: warning: unused variable 'i' [-Wunused-variable]
int i;
^
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rowPAUCs.c -o rowPAUCs.o
rowPAUCs.c:97:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
ta = ta += ((x[i]-(*p))*(y[i]-y[i-1])/2) + ((x[i]-(*p))*y[i-1]);
˜ ^
rowPAUCs.c:100:12: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
ta = ta += ((x[i]-x[i-1])*(y[i]-y[i-1])/2) + ((x[i]-x[i-1])*y[i-1]);
˜ ^
rowPAUCs.c:103:15: warning: multiple unsequenced modifications to 'ta' [-Wunsequenced]
ta = ta += ((1-x[i-1])*(1-y[i-1])/2) + ((1-x[i-1])*y[i-1]);
˜ ^
3 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c rowttests.c -o rowttests.o
gfortran-4.8 -fPIC -g -O2 -Wall -c ttest.f -o ttest.o
ttest.f:47.12:
dm=dm1-dm2
1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:50.12:
dm=dm1/dm2
1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:59.13:
tst=(dm1-dm2)/sqrt((1.d0/ng1+1.d0/ng2)*(dss1+dss2)/(ng1+ng2-2))
1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
ttest.f:62.10:
tst=(dm1-dm2)/sqrt(dss1/((ng1-1)*ng1)+dss2/((ng2-1)*ng2))
1
Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1)
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o genefilter.so half_range_mode.o init.o nd.o pAUC.o rowPAUCs.o rowttests.o ttest.o -L/usr/local/lib/gcc/x86_64-apple-darwin13.0.0/4.8.2 -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/genefilter/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
Creating a generic function for ‘plot’ from package ‘graphics’ in package ‘genefilter’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genefilter)