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BioC 2.14: BUILD BIN report for flowMatch on morelia

This page was generated on 2014-10-08 09:07:16 -0700 (Wed, 08 Oct 2014).

Package 285/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowMatch 1.1.2
Ariful Azad
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/flowMatch
Last Changed Rev: 93254 / Revision: 95116
Last Changed Date: 2014-08-08 12:21:11 -0700 (Fri, 08 Aug 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: flowMatch
Version: 1.1.2
Command: rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowMatch_1.1.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowMatch.buildbin-libdir
StartedAt: 2014-10-08 02:54:19 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:54:43 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 24.4 seconds
RetCode: 0
Status:  OK 
PackageFile: flowMatch_1.1.2.tgz
PackageFileSize: 3.767 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf flowMatch.buildbin-libdir && mkdir flowMatch.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowMatch_1.1.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowMatch.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowMatch.buildbin-libdir flowMatch_1.1.2.tar.gz'
>>>>>>> 

* installing *source* package ‘flowMatch’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c BipartiteGraph.cpp -o BipartiteGraph.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c MinWghtEdgCoverBipartite.cpp -o MinWghtEdgCoverBipartite.o
MinWghtEdgCoverBipartite.cpp:326:9: warning: unused variable 'avgSample2TemplateCost' [-Wunused-variable]
        double avgSample2TemplateCost;
               ^
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -I"/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rcpp/include"   -fPIC  -Wall -mtune=core2 -g -O2  -c flowMatch.cpp -o flowMatch.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o flowMatch.so BipartiteGraph.o MinWghtEdgCoverBipartite.o flowMatch.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/flowMatch.buildbin-libdir/flowMatch/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowMatch)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "flowMatch.buildbin-libdir/flowMatch/libs//flowMatch.so"