flowClust 3.4.10
Greg Finak , Mike Jiang
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/flowClust | | Last Changed Rev: 90343 / Revision: 95116 | | Last Changed Date: 2014-05-14 11:54:18 -0700 (Wed, 14 May 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/flowClust_3.4.10.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch flowClust_3.4.10.tar.gz && rm flowClust_3.4.10.tar.gz
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install for i386
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'flowClust' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c BoxCox.c -o BoxCox.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function 'BoxCoxGradientPriors':
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c Nu.c -o Nu.o
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
flowClust.c: In function 'ECMUpdateSigmaG2':
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
flowClust.c: In function 'flowClust':
flowClust.c:702:11: warning: 's3' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:647:13: warning: 's2' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:348:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:207:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c ranMVNT.c -o ranMVNT.o
gcc -m32 -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/flowClust/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'flowClust' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c BoxCox.c -o BoxCox.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c BoxCoxPriors.c -o BoxCoxPriors.o
BoxCoxPriors.c: In function 'BoxCoxGradientPriors':
BoxCoxPriors.c:57:16: warning: unused variable 'rowZ' [-Wunused-variable]
BoxCoxPriors.c:33:24: warning: unused variable 'kappa0' [-Wunused-variable]
BoxCoxPriors.c:32:7: warning: unused variable 'itersolve' [-Wunused-variable]
BoxCoxPriors.c:31:6: warning: unused variable 'iter' [-Wunused-variable]
BoxCoxPriors.c:28:6: warning: unused variable 'model' [-Wunused-variable]
BoxCoxPriors.c:23:14: warning: unused variable 'SumZlogY' [-Wunused-variable]
BoxCoxPriors.c:15:14: warning: unused variable 'Precision' [-Wunused-variable]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c Nu.c -o Nu.o
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flowClust.c -o flowClust.o
flowClust.c: In function 'flowClust':
flowClust.c:48:2: warning: unused variable 'matrixZUY2' [-Wunused-variable]
flowClust.c:46:48: warning: unused variable 'subRowZUY2' [-Wunused-variable]
flowClust.c:46:39: warning: unused variable 'rowZUY2' [-Wunused-variable]
flowClust.c: In function 'ECMUpdateSigmaG2':
flowClust.c:1111:6: warning: unused variable 'i' [-Wunused-variable]
flowClust.c: In function 'flowClust':
flowClust.c:702:11: warning: 's3' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:647:13: warning: 's2' may be used uninitialized in this function [-Wuninitialized]
flowClust.c:348:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c flowClustGaussian.c -o flowClustGaussian.o
flowClustGaussian.c: In function 'flowClustGaussian':
flowClustGaussian.c:207:12: warning: 's' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -I/src/include -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c ranMVNT.c -o ranMVNT.o
gcc -m64 -shared -s -static-libgcc -o flowClust.dll tmp.def BoxCox.o BoxCoxPriors.o Nu.o flowClust.o flowClustGaussian.o ranMVNT.o -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/flowClust/libs/x64
** testing if installed package can be loaded
* DONE (flowClust)