fastLiquidAssociation 1.0.2
Tina Gunderson
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/fastLiquidAssociation | | Last Changed Rev: 93708 / Revision: 95116 | | Last Changed Date: 2014-08-29 15:05:49 -0700 (Fri, 29 Aug 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | ERROR | skipped | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | [ ERROR ] | skipped | skipped |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | ERROR | skipped | skipped |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | ERROR | skipped | skipped |
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### Running command:
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### chmod a+r fastLiquidAssociation -R && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data fastLiquidAssociation
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* checking for file 'fastLiquidAssociation/DESCRIPTION' ... OK
* preparing 'fastLiquidAssociation':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"E:/biocbld/bbs-2.14-bioc/R/bin/i386/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
ERROR
Loading required package: dynamicTreeCut
Loading required package: flashClust
Attaching package: 'flashClust'
The following object is masked from 'package:stats':
hclust
Attaching package: 'WGCNA'
The following object is masked from 'package:stats':
cor
Loading required package: geepack
Loading required package: yeastCC
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from 'package:stats':
xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, do.call, duplicated,
eval, evalq, get, intersect, is.unsorted, lapply, mapply, match,
mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rep.int, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unlist
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: org.Sc.sgd.db
Loading required package: AnnotationDbi
Loading required package: GenomeInfoDb
Loading required package: DBI
Loading required package: Hmisc
Loading required package: grid
Loading required package: lattice
Loading required package: survival
Loading required package: splines
Loading required package: Formula
Attaching package: 'Hmisc'
The following object is masked from 'package:AnnotationDbi':
contents
The following objects are masked from 'package:Biobase':
combine, contents
The following object is masked from 'package:BiocGenerics':
combine
The following objects are masked from 'package:base':
format.pval, round.POSIXt, trunc.POSIXt, units
Error: processing vignette 'fastLiquidAssociation.Rnw' failed with diagnostics:
chunk 3 (label = calculate top MLA)
Error in fastMLA(data = data, topn = 50, nvec = 1:5, rvalue = 0.5, cut = 4, :
unused argument (threads = detectCores())
Execution halted