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BioC 2.14: INSTALL report for VariantFiltering on zin2

This page was generated on 2014-10-08 08:50:32 -0700 (Wed, 08 Oct 2014).

Package 804/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VariantFiltering 1.0.4
Robert Castelo
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/VariantFiltering
Last Changed Rev: 91489 / Revision: 95116
Last Changed Date: 2014-06-16 14:56:15 -0700 (Mon, 16 Jun 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64 [ OK ] OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: VariantFiltering
Version: 1.0.4
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL VariantFiltering
StartedAt: 2014-10-07 18:10:12 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:10:36 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 24.4 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL VariantFiltering
###
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* installing to library ‘/home/biocbuild/bbs-2.14-bioc/R/library’
* installing *source* package ‘VariantFiltering’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-2.14-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-2.14-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-2.14-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-2.14-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-2.14-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-2.14-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c R_init_VariantFiltering.c -o R_init_VariantFiltering.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG  -I/usr/local/include -I"/home/biocbuild/bbs-2.14-bioc/R/library/IRanges/include" -I"/home/biocbuild/bbs-2.14-bioc/R/library/XVector/include" -I"/home/biocbuild/bbs-2.14-bioc/R/library/Biostrings/include"   -fpic  -g -O2  -Wall -c methods-WeightMatrix.c -o methods-WeightMatrix.o
methods-WeightMatrix.c: In function ‘scoss_wm_score_DNAStringSet’:
methods-WeightMatrix.c:122:23: warning: unused variable ‘k’ [-Wunused-variable]
gcc -std=gnu99 -shared -L/usr/local/lib -o VariantFiltering.so Biostrings_stubs.o R_init_VariantFiltering.o methods-WeightMatrix.o -L/home/biocbuild/bbs-2.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.14-bioc/R/library/VariantFiltering/libs
** R
** inst
** preparing package for lazy loading
Note: the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Note: the specification for S3 class “AsIs” in package ‘RJSONIO’ seems equivalent to one from package ‘BiocGenerics’: not turning on duplicate class definitions for this class.
* DONE (VariantFiltering)