PICS 2.8.0
Renan Sauteraud
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/PICS | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O http://zin2/BBS/2.14/bioc/src/contrib/PICS_2.8.0.tar.gz && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch PICS_2.8.0.tar.gz && rm PICS_2.8.0.tar.gz
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install for i386
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'PICS' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c pics.c -o pics.o
pics.c: In function 'iterEM':
pics.c:581:25: warning: unused variable 'mu' [-Wunused-variable]
pics.c: In function 'ECM1':
pics.c:803:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
pics.c:963:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
pics.c:651:15: warning: unused variable 'k' [-Wunused-variable]
pics.c: In function 'ECM2':
pics.c:1009:66: warning: unused variable 'ee' [-Wunused-variable]
pics.c:1009:57: warning: unused variable 'ggR' [-Wunused-variable]
pics.c:1009:52: warning: unused variable 'ggF' [-Wunused-variable]
pics.c:1009:47: warning: unused variable 'aaR' [-Wunused-variable]
pics.c:1009:42: warning: unused variable 'aaF' [-Wunused-variable]
pics.c:1009:29: warning: unused variable 'etaDiff' [-Wunused-variable]
pics.c:1009:9: warning: variable 'chiSum' set but not used [-Wunused-but-set-variable]
pics.c:1000:15: warning: unused variable 'k' [-Wunused-variable]
pics.c: In function 'BIC':
pics.c:1272:96: warning: unused variable 'k' [-Wunused-variable]
pics.c: In function 'getInfMat':
pics.c:1633:76: warning: unused variable 'PhiRw' [-Wunused-variable]
pics.c:1633:69: warning: unused variable 'PhiFw' [-Wunused-variable]
pics.c: In function 'mergePeak':
pics.c:1889:11: warning: unused variable 'j' [-Wunused-variable]
pics.c:1889:7: warning: unused variable 'i' [-Wunused-variable]
pics.c: In function 'BIC':
pics.c:1307:6: warning: 'penalty' may be used uninitialized in this function [-Wuninitialized]
pics.c: In function 'fitModelK':
pics.c:421:18: warning: 'firstFit' may be used uninitialized in this function [-Wuninitialized]
gcc -m32 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O3 -Wall -std=gnu99 -mtune=core2 -c segment.c -o segment.o
segment.c: In function 'segReads':
segment.c:123:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:114:45: warning: unused variable 'count' [-Wunused-variable]
segment.c: In function 'callRegions':
segment.c:308:7: warning: unused variable 'i' [-Wunused-variable]
segment.c: In function 'getSegL':
segment.c:1364:11: warning: unused variable 'j' [-Wunused-variable]
segment.c: In function 'getDensity':
segment.c:1543:9: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1544:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1545:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1546:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1547:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1548:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1549:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1494:19: warning: variable 'chr' set but not used [-Wunused-but-set-variable]
segment.c:1490:8: warning: unused variable 'filter1' [-Wunused-variable]
segment.c:1489:11: warning: unused variable 'muFilter' [-Wunused-variable]
gcc -m32 -shared -s -static-libgcc -o PICS.dll tmp.def pics.o segment.o -lws2_32 -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/i386 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/PICS/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing to library 'E:/biocbld/bbs-2.14-bioc/R/library'
* installing *source* package 'PICS' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c pics.c -o pics.o
pics.c: In function 'iterEM':
pics.c:581:25: warning: unused variable 'mu' [-Wunused-variable]
pics.c: In function 'ECM1':
pics.c:803:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
pics.c:963:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
pics.c:651:15: warning: unused variable 'k' [-Wunused-variable]
pics.c: In function 'ECM2':
pics.c:1009:66: warning: unused variable 'ee' [-Wunused-variable]
pics.c:1009:57: warning: unused variable 'ggR' [-Wunused-variable]
pics.c:1009:52: warning: unused variable 'ggF' [-Wunused-variable]
pics.c:1009:47: warning: unused variable 'aaR' [-Wunused-variable]
pics.c:1009:42: warning: unused variable 'aaF' [-Wunused-variable]
pics.c:1009:29: warning: unused variable 'etaDiff' [-Wunused-variable]
pics.c:1009:9: warning: variable 'chiSum' set but not used [-Wunused-but-set-variable]
pics.c:1000:15: warning: unused variable 'k' [-Wunused-variable]
pics.c: In function 'BIC':
pics.c:1272:96: warning: unused variable 'k' [-Wunused-variable]
pics.c: In function 'getInfMat':
pics.c:1633:76: warning: unused variable 'PhiRw' [-Wunused-variable]
pics.c:1633:69: warning: unused variable 'PhiFw' [-Wunused-variable]
pics.c: In function 'mergePeak':
pics.c:1889:11: warning: unused variable 'j' [-Wunused-variable]
pics.c:1889:7: warning: unused variable 'i' [-Wunused-variable]
pics.c: In function 'BIC':
pics.c:1307:6: warning: 'penalty' may be used uninitialized in this function [-Wuninitialized]
pics.c: In function 'fitModelK':
pics.c:421:18: warning: 'firstFit' may be used uninitialized in this function [-Wuninitialized]
gcc -m64 -I"E:/biocbld/BBS-2˜1.14-/R/include" -DNDEBUG -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/x64/include -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99 -mtune=core2 -c segment.c -o segment.o
segment.c: In function 'segReads':
segment.c:123:3: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:114:45: warning: unused variable 'count' [-Wunused-variable]
segment.c: In function 'callRegions':
segment.c:308:7: warning: unused variable 'i' [-Wunused-variable]
segment.c: In function 'getSegL':
segment.c:1364:11: warning: unused variable 'j' [-Wunused-variable]
segment.c: In function 'getDensity':
segment.c:1543:9: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1544:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1545:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1546:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1547:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1548:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1549:11: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
segment.c:1494:19: warning: variable 'chr' set but not used [-Wunused-but-set-variable]
segment.c:1490:8: warning: unused variable 'filter1' [-Wunused-variable]
segment.c:1489:11: warning: unused variable 'muFilter' [-Wunused-variable]
gcc -m64 -shared -s -static-libgcc -o PICS.dll tmp.def pics.o segment.o -lws2_32 -LC:/GSL/x64/lib -lgsl -lgslcblas -lm -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LE:/biocbld/BBS-2˜1.14-/R/bin/x64 -lR
installing to E:/biocbld/bbs-2.14-bioc/R/library/PICS/libs/x64
** testing if installed package can be loaded
* DONE (PICS)