BioC 2.14: CHECK report for OSAT on moscato2

Package: OSAT

Version: 1.12.0

Command: rm -rf OSAT.buildbin-libdir && mkdir OSAT.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OSAT.buildbin-libdir OSAT_1.12.0.tar.gz >OSAT-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=OSAT.buildbin-libdir --install="check:OSAT-install.out" --force-multiarch --no-vignettes --timings OSAT_1.12.0.tar.gz

StartedAt: 2014-10-08 03:33:23 -0700 (Wed, 08 Oct 2014)

EndedAt: 2014-10-08 03:34:18 -0700 (Wed, 08 Oct 2014)

EllapsedTime: 54.5 seconds

RetCode: 0

Status:  OK

CheckDir: OSAT.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf OSAT.buildbin-libdir && mkdir OSAT.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=OSAT.buildbin-libdir OSAT_1.12.0.tar.gz >OSAT-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=OSAT.buildbin-libdir --install="check:OSAT-install.out" --force-multiarch --no-vignettes --timings OSAT_1.12.0.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/OSAT.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OSAT/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'OSAT' version '1.12.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OSAT' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [12s] OK
** running examples for arch 'x64' ... [10s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'OSAT' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'OSAT' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OSAT' as OSAT_1.12.0.zip
* DONE (OSAT)

name	user	system	elapsed
BeadChip-class	0.02	0.00	0.02
BeadPlate-class	0	0	0
MSAroboticPlate-class	0.61	0.00	0.61
QC	1.77	0.00	1.78
create.optimized.setup	2.33	0.00	2.32
example.setup	0.09	0.00	0.17
gContainer-class	0.03	0.00	0.03
gExperimentSetup-class	0.13	0.00	0.13
gSample-class	0.04	0.00	0.04
gSlide-class	0	0	0
get.experiment.setup	2.38	0.01	2.39
multi.barplot	0.01	0.00	0.02
multi.chisq.test	0.02	0.00	0.01
optimal.block	2.4	0.0	2.4
optimal.shuffle	1.73	0.00	1.74

name	user	system	elapsed
BeadChip-class	0.03	0.00	0.03
BeadPlate-class	0.02	0.00	0.02
MSAroboticPlate-class	0.42	0.00	0.42
QC	1.59	0.00	1.59
create.optimized.setup	1.7	0.0	1.7
example.setup	0.05	0.00	0.05
gContainer-class	0.03	0.00	0.03
gExperimentSetup-class	0.08	0.00	0.08
gSample-class	0.03	0.00	0.03
gSlide-class	0	0	0
get.experiment.setup	1.76	0.00	1.76
multi.barplot	0.02	0.00	0.02
multi.chisq.test	0.01	0.00	0.01
optimal.block	2.53	0.00	2.53
optimal.shuffle	1.68	0.00	1.69