HilbertVisGUI 1.22.0
Simon Anders
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/HilbertVisGUI | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | NotNeeded | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | NotNeeded | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | NotNeeded | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | NotNeeded | [ ERROR ] | skipped | skipped |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data HilbertVisGUI
###
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* checking for file ‘HilbertVisGUI/DESCRIPTION’ ... OK
* preparing ‘HilbertVisGUI’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘HilbertVisGUI’ ...
-n Checking for pkg-config...
/usr/local/bin/pkg-config
-n Checking for gtkmm-2.4...
found: version 2.24.2
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -fPIC -Wall -mtune=core2 -g -O2 -c R_env_prot.c -o R_env_prot.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c R_interface.cc -o R_interface.o
In file included from R_interface.cc:8:
In file included from ./display.h:7:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm.h:177:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/pagesetup.h:28:
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:290:1: warning: 'PaperSizeTraits' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct PaperSizeTraits
^
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:35:1: note: did you mean struct here?
class PaperSizeTraits;
^˜˜˜˜
struct
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4;
^
2 warnings generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c colorizers.cc -o colorizers.o
In file included from colorizers.cc:1:
In file included from ./colorizers.h:6:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm.h:177:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/pagesetup.h:28:
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:290:1: warning: 'PaperSizeTraits' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct PaperSizeTraits
^
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:35:1: note: did you mean struct here?
class PaperSizeTraits;
^˜˜˜˜
struct
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c display.cc -o display.o
In file included from display.cc:1:
In file included from ./display.h:7:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm.h:177:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/pagesetup.h:28:
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:290:1: warning: 'PaperSizeTraits' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct PaperSizeTraits
^
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:35:1: note: did you mean struct here?
class PaperSizeTraits;
^˜˜˜˜
struct
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c ruler.cc -o ruler.o
In file included from ruler.cc:6:
In file included from ./ruler.h:4:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm.h:177:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/pagesetup.h:28:
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:290:1: warning: 'PaperSizeTraits' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct PaperSizeTraits
^
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:35:1: note: did you mean struct here?
class PaperSizeTraits;
^˜˜˜˜
struct
1 warning generated.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `pkg-config gtkmm-2.4 --cflags` -DSO_NAME=HilbertVisGUI -DSO_NAME=HilbertVisGUI -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c window.cc -o window.o
In file included from window.cc:4:
In file included from ./window.h:5:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm.h:177:
In file included from /Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/pagesetup.h:28:
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:290:1: warning: 'PaperSizeTraits' defined as a struct here but previously declared as a class [-Wmismatched-tags]
struct PaperSizeTraits
^
/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/include/gtkmm-2.4/gtkmm/papersize.h:35:1: note: did you mean struct here?
class PaperSizeTraits;
^˜˜˜˜
struct
1 warning generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o HilbertVisGUI.so R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o /usr/local/lib/libfontconfig.a -L/usr/local/lib -L/Library/Frameworks/GTK+.framework/Versions/2.24.X11/Resources/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-x11-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lcairo -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lintl -lfreetype -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/RtmpdJugWF/Rinst167ab36b4f5b2/HilbertVisGUI/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Error in dyn.load(file, DLLpath = DLLpath, ...) :
unable to load shared object '/private/tmp/RtmpdJugWF/Rinst167ab36b4f5b2/HilbertVisGUI/libs/HilbertVisGUI.so':
dlopen(/private/tmp/RtmpdJugWF/Rinst167ab36b4f5b2/HilbertVisGUI/libs/HilbertVisGUI.so, 6): Symbol not found: __ZN3Gdk6Pixbuf4saveERKNSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEERKN4Glib7ustringE
Referenced from: /private/tmp/RtmpdJugWF/Rinst167ab36b4f5b2/HilbertVisGUI/libs/HilbertVisGUI.so
Expected in: flat namespace
in /private/tmp/RtmpdJugWF/Rinst167ab36b4f5b2/HilbertVisGUI/libs/HilbertVisGUI.so
| The package's DLL could not be loaded. Most likely this is
| because you do not have 'gtkmm' installed on your system,
| which is required by the package.
Error : .onLoad failed in loadNamespace() for 'HilbertVisGUI', details:
call: failedToLoadDLL()
error: Unknown value in .Platform$pkgType
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/private/tmp/RtmpdJugWF/Rinst167ab36b4f5b2/HilbertVisGUI’
-----------------------------------
ERROR: package installation failed