Biobase 2.24.0
Bioconductor Package Maintainer
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/Biobase | | Last Changed Rev: 88838 / Revision: 95116 | | Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | [ OK ] |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | OK | OK |
##############################################################################
##############################################################################
###
### Running command:
###
### cd Biobase.buildbin-libdir/Biobase && zip -r ../../Biobase_2.24.0.zip . & cd ../..
###
##############################################################################
##############################################################################
adding: CITATION (188 bytes security) (deflated 47%)
adding: Code/ (256 bytes security) (stored 0%)
adding: Code/DESCRIPTION (188 bytes security) (deflated 19%)
adding: Code/man/ (256 bytes security) (stored 0%)
adding: Code/man/@PKGNAME@.Rd (188 bytes security) (deflated 39%)
adding: Code/man/get@PKGNAME@.Rd (188 bytes security) (deflated 40%)
adding: Code/R/ (256 bytes security) (stored 0%)
adding: Code/R/get@PKGNAME@.R (188 bytes security) (deflated 18%)
adding: data/ (256 bytes security) (stored 0%)
adding: data/aaMap.R (188 bytes security) (deflated 62%)
adding: data/geneCov.R (188 bytes security) (deflated 62%)
adding: data/geneCovariate.rda (188 bytes security) (stored 0%)
adding: data/geneData.R (188 bytes security) (deflated 57%)
adding: data/reporter.rda (188 bytes security) (deflated 1%)
adding: data/sample.eSet.R (188 bytes security) (deflated 15%)
adding: data/sample.ExpressionSet.rda (188 bytes security) (deflated 0%)
adding: data/sample.exprSet.1.R (188 bytes security) (deflated 14%)
adding: data/sample.exprSet.R (188 bytes security) (deflated 14%)
adding: data/sample.MultiSet.rda (188 bytes security) (stored 0%)
adding: data/seD.rda (188 bytes security) (stored 0%)
adding: data/SW.rda (188 bytes security) (deflated 0%)
adding: DESCRIPTION (188 bytes security) (deflated 48%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/BiobaseDevelopment.pdf (188 bytes security) (deflated 10%)
adding: doc/BiobaseDevelopment.R (188 bytes security) (deflated 82%)
adding: doc/BiobaseDevelopment.Rnw (188 bytes security) (deflated 69%)
adding: doc/Bioconductor.pdf (188 bytes security) (deflated 8%)
adding: doc/Bioconductor.R (188 bytes security) (deflated 53%)
adding: doc/Bioconductor.Rnw (188 bytes security) (deflated 50%)
adding: doc/esApply.pdf (188 bytes security) (deflated 7%)
adding: doc/esApply.R (188 bytes security) (deflated 79%)
adding: doc/esApply.Rnw (188 bytes security) (deflated 56%)
adding: doc/ExpressionSetIntroduction.pdf (188 bytes security) (deflated 10%)
adding: doc/ExpressionSetIntroduction.R (188 bytes security) (deflated 81%)
adding: doc/ExpressionSetIntroduction.Rnw (188 bytes security) (deflated 63%)
adding: doc/HowTo.pdf (188 bytes security) (deflated 8%)
adding: doc/HowTo.R (188 bytes security) (deflated 53%)
adding: doc/HowTo.Rnw (188 bytes security) (deflated 53%)
adding: doc/index.html (188 bytes security) (deflated 79%)
adding: doc/Qviews.pdf (188 bytes security) (deflated 9%)
adding: doc/Qviews.R (188 bytes security) (deflated 75%)
adding: doc/Qviews.Rnw (188 bytes security) (deflated 62%)
adding: ExpressionSet/ (256 bytes security) (stored 0%)
adding: ExpressionSet/DESCRIPTION (188 bytes security) (deflated 20%)
adding: ExpressionSet/man/ (256 bytes security) (stored 0%)
adding: ExpressionSet/man/@PKGNAME@.Rd (188 bytes security) (deflated 26%)
adding: extdata/ (256 bytes security) (stored 0%)
adding: extdata/exprsData.txt (188 bytes security) (deflated 53%)
adding: extdata/pData.txt (188 bytes security) (deflated 57%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 83%)
adding: help/Biobase.rdb (188 bytes security) (deflated 1%)
adding: help/Biobase.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 90%)
adding: html/R.css (188 bytes security) (deflated 70%)
adding: INDEX (188 bytes security) (deflated 68%)
adding: libs/ (256 bytes security) (stored 0%)
adding: libs/i386/ (256 bytes security) (stored 0%)
adding: libs/i386/Biobase.dll (188 bytes security) (deflated 52%)
adding: libs/x64/ (256 bytes security) (stored 0%)
adding: libs/x64/Biobase.dll (188 bytes security) (deflated 55%)
adding: MD5 (188 bytes security) (deflated 57%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (deflated 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 63%)
adding: NEWS (188 bytes security) (deflated 66%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/Biobase (188 bytes security) (deflated 41%)
adding: R/Biobase.rdb (188 bytes security) (deflated 31%)
adding: R/Biobase.rdx (188 bytes security) (deflated 4%)
adding: scripts/ (256 bytes security) (stored 0%)
adding: scripts/esetTesting.R (188 bytes security) (deflated 49%)
adding: scripts/getBioC.R (188 bytes security) (deflated 67%)
adding: scripts/getBioCHelp (188 bytes security) (deflated 54%)
adding: scripts/getBioCPkgNames.R (188 bytes security) (deflated 56%)
adding: scripts/makeExpressionSetPackage.R (188 bytes security) (deflated 52%)
adding: scripts/query.packages.R (188 bytes security) (deflated 75%)
adding: testClass.R (188 bytes security) (deflated 44%)
adding: unitTests/ (256 bytes security) (stored 0%)
adding: unitTests/test_AnnotatedDataFrame.R (188 bytes security) (deflated 77%)
adding: unitTests/test_AssayData.R (188 bytes security) (deflated 70%)
adding: unitTests/test_cache.R (188 bytes security) (deflated 69%)
adding: unitTests/test_checkClass.R (188 bytes security) (deflated 24%)
adding: unitTests/test_combine.R (188 bytes security) (deflated 63%)
adding: unitTests/test_copyEnv.R (188 bytes security) (deflated 48%)
adding: unitTests/test_DataClasses.R (188 bytes security) (deflated 45%)
adding: unitTests/test_esApply.R (188 bytes security) (deflated 82%)
adding: unitTests/test_EsetSubclasses.R (188 bytes security) (deflated 80%)
adding: unitTests/test_ExpressionSet.R (188 bytes security) (deflated 77%)
adding: unitTests/test_NChannelSet.R (188 bytes security) (deflated 83%)
adding: unitTests/test_SnpSet.R (188 bytes security) (deflated 62%)
adding: unitTests/test_subListExtract.R (188 bytes security) (deflated 70%)
adding: unitTests/test_unsaveSetSlot.R (188 bytes security) (deflated 73%)
adding: unitTests/test_UpdateObject.R (188 bytes security) (deflated 77%)
adding: unitTests/test_VersionedClass.R (188 bytes security) (deflated 76%)
adding: unitTests/utilities.R (188 bytes security) (deflated 60%)
adding: unitTests/VersionedClass_data/ (256 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/1.8/ (256 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/1.8/AnnotatedDataFrame.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/1.8/ExpressionSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/1.8/exprSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/1.8/MIAME.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/1.8/phenoData.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/ (256 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/aggregator.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/AnnotatedDataFrame.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/container.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/ExpressionSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/exprSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/MIAME.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/MultiSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/phenoData.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/ScalarCharacter.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/SnpSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/Versioned.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/VersionedBiobase.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/Versions.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/2.0/VersionsNull.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/ (256 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/aggregator.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/AnnotatedDataFrame.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/bbsym.rda (188 bytes security) (deflated 0%)
adding: unitTests/VersionedClass_data/devel/container.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/eset.rda (188 bytes security) (deflated 0%)
adding: unitTests/VersionedClass_data/devel/ExpressionSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/exprSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/golubMergeSub.rda (188 bytes security) (deflated 2%)
adding: unitTests/VersionedClass_data/devel/MIAME.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/MultiSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/NChannelSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/sample.eSet.rda (188 bytes security) (deflated 2%)
adding: unitTests/VersionedClass_data/devel/sample.exprSet.1.rda (188 bytes security) (deflated 0%)
adding: unitTests/VersionedClass_data/devel/sample.exprSet.rda (188 bytes security) (deflated 1%)
adding: unitTests/VersionedClass_data/devel/ScalarCharacter.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/ScalarInteger.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/ScalarLogical.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/ScalarNumeric.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/SnpSet.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/SWPD.rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/swrep.rda (188 bytes security) (deflated 76%)
adding: unitTests/VersionedClass_data/devel/Versioned.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/VersionedBiobase.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/Versions.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/devel/VersionsNull.Rda (188 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/raw/ (256 bytes security) (stored 0%)
adding: unitTests/VersionedClass_data/raw/exprs.tab (188 bytes security) (deflated 58%)
adding: unitTests/VersionedClass_data/raw/pData.tab (188 bytes security) (deflated 66%)
adding: unitTests/VersionedClass_data/raw/varMetadata.tab (188 bytes security) (deflated 42%)