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BioC 2.14: BUILD BIN report for BayesPeak on morelia

This page was generated on 2014-10-08 09:04:17 -0700 (Wed, 08 Oct 2014).

Package 67/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BayesPeak 1.16.0
Jonathan Cairns
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/BayesPeak
Last Changed Rev: 88838 / Revision: 95116
Last Changed Date: 2014-04-11 14:07:21 -0700 (Fri, 11 Apr 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64  NotNeeded  OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  NotNeeded  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]

Summary

Package: BayesPeak
Version: 1.16.0
Command: rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BayesPeak_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BayesPeak.buildbin-libdir
StartedAt: 2014-10-08 02:47:03 -0700 (Wed, 08 Oct 2014)
EndedAt: 2014-10-08 02:47:10 -0700 (Wed, 08 Oct 2014)
EllapsedTime: 7.0 seconds
RetCode: 0
Status:  OK 
PackageFile: BayesPeak_1.16.0.tgz
PackageFileSize: 1.889 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf BayesPeak.buildbin-libdir && mkdir BayesPeak.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BayesPeak_1.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BayesPeak.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BayesPeak.buildbin-libdir BayesPeak_1.16.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BayesPeak’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c bayespeak.c -o bayespeak.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BayesPeak.so bayespeak.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.14-bioc/meat/BayesPeak.buildbin-libdir/BayesPeak/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BayesPeak)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BayesPeak.buildbin-libdir/BayesPeak/libs//BayesPeak.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "BayesPeak.buildbin-libdir/BayesPeak/libs//BayesPeak.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "BayesPeak.buildbin-libdir/BayesPeak/libs//BayesPeak.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "BayesPeak.buildbin-libdir/BayesPeak/libs//BayesPeak.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "BayesPeak.buildbin-libdir/BayesPeak/libs//BayesPeak.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "BayesPeak.buildbin-libdir/BayesPeak/libs//BayesPeak.so"