BioC 2.14: CHECK report for AffyCompatible on moscato2

Package: AffyCompatible

Version: 1.24.1

Command: rm -rf AffyCompatible.buildbin-libdir && mkdir AffyCompatible.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AffyCompatible.buildbin-libdir AffyCompatible_1.24.1.tar.gz >AffyCompatible-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=AffyCompatible.buildbin-libdir --install="check:AffyCompatible-install.out" --force-multiarch --no-vignettes --timings AffyCompatible_1.24.1.tar.gz

StartedAt: 2014-10-07 22:25:20 -0700 (Tue, 07 Oct 2014)

EndedAt: 2014-10-07 22:29:13 -0700 (Tue, 07 Oct 2014)

EllapsedTime: 233.7 seconds

RetCode: 0

Status:  OK

CheckDir: AffyCompatible.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf AffyCompatible.buildbin-libdir && mkdir AffyCompatible.buildbin-libdir && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AffyCompatible.buildbin-libdir AffyCompatible_1.24.1.tar.gz >AffyCompatible-install.out 2>&1 && E:\biocbld\bbs-2.14-bioc\R\bin\R.exe CMD check --library=AffyCompatible.buildbin-libdir --install="check:AffyCompatible-install.out" --force-multiarch --no-vignettes --timings AffyCompatible_1.24.1.tar.gz
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* using log directory 'E:/biocbld/bbs-2.14-bioc/meat/AffyCompatible.Rcheck'
* using R version 3.1.1 (2014-07-10)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.24.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AffyCompatible' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [22s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
NetAffxResource-class 9.56   0.18   12.77
** running examples for arch 'x64' ... [24s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
NetAffxResource-class 8.59   0.22   12.52
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'AffyCompatible' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AffyCompatible' as AffyCompatible_1.24.1.zip
* DONE (AffyCompatible)

name	user	system	elapsed
AffyCompatible-class	0	0	0
NetAffxResource-class	9.56	0.18	12.77
readArr	0.5	0.0	0.5
readMage	1.93	0.00	1.94
readNetAffx	0	0	0
readXml	0.11	0.00	0.11
xclass	0.21	0.00	0.57
zzz-ARRCompatibility-class	0	0	0
zzz-DTTCompatibility-class	0.04	0.00	0.05
zzz-NetAffxCompatibility-class	0	0	0

name	user	system	elapsed
AffyCompatible-class	0	0	0
NetAffxResource-class	8.59	0.22	12.52
readArr	0.53	0.00	0.54
readMage	2.13	0.00	2.12
readNetAffx	0	0	0
readXml	0.14	0.00	0.14
xclass	0.17	0.00	2.34
zzz-ARRCompatibility-class	0	0	0
zzz-DTTCompatibility-class	0.05	0.00	0.05
zzz-NetAffxCompatibility-class	0.02	0.00	0.02