BioC experimental data: CHECK report for stjudem on moscato1

Package: stjudem

Version: 1.2.10

Command: rm -rf stjudem.buildbin-libdir && mkdir stjudem.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=stjudem.buildbin-libdir stjudem_1.2.10.tar.gz >stjudem-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=stjudem.buildbin-libdir --install="check:stjudem-install.out" --force-multiarch --no-vignettes --timings stjudem_1.2.10.tar.gz && mv stjudem.buildbin-libdir/* stjudem.Rcheck/ && rmdir stjudem.buildbin-libdir

StartedAt: 2014-04-04 12:38:10 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:39:24 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 73.9 seconds

RetCode: 0

Status:  OK

CheckDir: stjudem.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/stjudem.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'stjudem/DESCRIPTION' ... OK
* this is package 'stjudem' version '1.2.10'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'stjudem' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 27.6Mb
  sub-directories of 1Mb or more:
    data  27.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'stjudem/R/zzz.R':
  .onLoad calls:
    packageStartupMessage("Type 'data(stjude)' to load the data set.")
    packageStartupMessage("Then type 'summary(stjude)' for an overview of the data structure.")
    packageStartupMessage("See package 'macat' for examplary analyses.")

See section 'Good practice' in '?.onAttach'.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [3s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/stjudem.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'stjudem' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'stjudem' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'stjudem' as stjudem_1.2.10.zip
* DONE (stjudem)

name	user	system	elapsed
stjude	3.22	0.07	3.29

name	user	system	elapsed
stjude	2.84	0.07	2.91