BioC experimental data: CHECK report for Hiiragi2013 on moscato1

Package: Hiiragi2013

Version: 0.99.14

Command: rm -rf Hiiragi2013.buildbin-libdir && mkdir Hiiragi2013.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Hiiragi2013.buildbin-libdir Hiiragi2013_0.99.14.tar.gz >Hiiragi2013-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=Hiiragi2013.buildbin-libdir --install="check:Hiiragi2013-install.out" --force-multiarch --no-vignettes --timings Hiiragi2013_0.99.14.tar.gz && mv Hiiragi2013.buildbin-libdir/* Hiiragi2013.Rcheck/ && rmdir Hiiragi2013.buildbin-libdir

StartedAt: 2014-04-04 11:56:05 -0700 (Fri, 04 Apr 2014)

EndedAt: 2014-04-04 12:04:33 -0700 (Fri, 04 Apr 2014)

EllapsedTime: 507.6 seconds

RetCode: 0

Status:  OK

CheckDir: Hiiragi2013.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-data-experiment/meat/Hiiragi2013.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Hiiragi2013/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Hiiragi2013' version '0.99.14'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Hiiragi2013' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 138.3Mb
  sub-directories of 1Mb or more:
    data  136.3Mb
    doc     1.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'Biobase' 'KEGGREST' 'MASS' 'RColorBrewer' 'affy' 'boot' 'clue'
  'cluster' 'genefilter' 'geneplotter' 'gplots' 'gtools' 'lattice'
  'latticeExtra' 'mouse4302.db' 'xtable'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [57s] OK
Examples with CPU or elapsed time > 5s
         user system elapsed
a       21.02   0.68   26.81
MDSplot  5.07   0.04    5.11
** running examples for arch 'x64' ... [55s] OK
Examples with CPU or elapsed time > 5s
                               user system elapsed
a                             15.35   0.52   15.91
getDifferentialExpressedGenes  5.09   0.31    5.63
MDSplot                        4.76   0.07    6.36
pamCluster                     3.45   0.08   10.16
x                              3.27   0.08    5.64
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-data-experiment/meat/Hiiragi2013.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'Hiiragi2013' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Hiiragi2013' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Hiiragi2013' as Hiiragi2013_0.99.14.zip
* DONE (Hiiragi2013)

name	user	system	elapsed
MDSplot	5.07	0.04	5.11
a	21.02	0.68	26.81
getDifferentialExpressedGenes	4.38	0.12	4.54
myHeatmap	4.25	0.08	4.32
myHeatmap2	0	0	0
pamCluster	3.66	0.06	4.76
plotProjection	0	0	0
x	3.61	0.03	3.63
xq	0.01	0.02	0.03
xql	0.02	0.00	0.02

name	user	system	elapsed
MDSplot	4.76	0.07	6.36
a	15.35	0.52	15.91
getDifferentialExpressedGenes	5.09	0.31	5.63
myHeatmap	4.02	0.13	4.15
myHeatmap2	0	0	0
pamCluster	3.45	0.08	10.16
plotProjection	0	0	0
x	3.27	0.08	5.64
xq	0.04	0.00	0.03
xql	0.01	0.00	0.02