lpNet 1.2.0
Bettina Knapp
| Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/lpNet | | Last Changed Rev: 81642 / Revision: 88450 | | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/lpNet.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'lpNet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'lpNet' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'lpNet' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: CV.Rd:79-81: Dropping empty section \details
prepare_Rd: CV.Rd:93-95: Dropping empty section \note
prepare_Rd: CV.Rd:90-92: Dropping empty section \author
prepare_Rd: CV.Rd:87-89: Dropping empty section \references
prepare_Rd: CV.Rd:99-101: Dropping empty section \seealso
prepare_Rd: calcActivation.Rd:28-30: Dropping empty section \details
prepare_Rd: calcActivation.Rd:40-42: Dropping empty section \note
prepare_Rd: calcActivation.Rd:37-39: Dropping empty section \author
prepare_Rd: calcActivation.Rd:34-36: Dropping empty section \references
prepare_Rd: calcActivation.Rd:46-48: Dropping empty section \seealso
prepare_Rd: calcPrediction.Rd:59-61: Dropping empty section \details
prepare_Rd: calcPrediction.Rd:71-73: Dropping empty section \note
prepare_Rd: calcPrediction.Rd:68-70: Dropping empty section \author
prepare_Rd: calcPrediction.Rd:65-67: Dropping empty section \references
prepare_Rd: calcRangeLambda.Rd:25-27: Dropping empty section \details
prepare_Rd: calcRangeLambda.Rd:37-39: Dropping empty section \note
prepare_Rd: calcRangeLambda.Rd:34-36: Dropping empty section \author
prepare_Rd: calcRangeLambda.Rd:31-33: Dropping empty section \references
prepare_Rd: calcRangeLambda.Rd:43-45: Dropping empty section \seealso
prepare_Rd: doILP.Rd:53-55: Dropping empty section \details
prepare_Rd: doILP.Rd:65-67: Dropping empty section \note
prepare_Rd: doILP.Rd:62-64: Dropping empty section \author
prepare_Rd: doILP.Rd:59-61: Dropping empty section \references
prepare_Rd: doILP.Rd:71-73: Dropping empty section \seealso
prepare_Rd: getAdja.Rd:22-24: Dropping empty section \details
prepare_Rd: getAdja.Rd:34-36: Dropping empty section \note
prepare_Rd: getAdja.Rd:31-33: Dropping empty section \author
prepare_Rd: getAdja.Rd:28-30: Dropping empty section \references
prepare_Rd: getEdgeAnnot.Rd:22-24: Dropping empty section \details
prepare_Rd: getEdgeAnnot.Rd:34-36: Dropping empty section \note
prepare_Rd: getEdgeAnnot.Rd:31-33: Dropping empty section \author
prepare_Rd: getEdgeAnnot.Rd:28-30: Dropping empty section \references
prepare_Rd: getEdgeAnnot.Rd:40-42: Dropping empty section \seealso
prepare_Rd: getObsMat.Rd:31-33: Dropping empty section \details
prepare_Rd: getObsMat.Rd:43-45: Dropping empty section \note
prepare_Rd: getObsMat.Rd:40-42: Dropping empty section \author
prepare_Rd: getObsMat.Rd:37-39: Dropping empty section \references
prepare_Rd: getSampleAdja.Rd:37-39: Dropping empty section \details
prepare_Rd: getSampleAdja.Rd:49-51: Dropping empty section \note
prepare_Rd: getSampleAdja.Rd:46-48: Dropping empty section \author
prepare_Rd: getSampleAdja.Rd:43-45: Dropping empty section \references
prepare_Rd: lpNet-package.Rd:22-25: Dropping empty section \author
prepare_Rd: lpNet-package.Rd:34-37: Dropping empty section \seealso
prepare_Rd: lpNet-package.Rd:38-40: Dropping empty section \examples
prepare_Rd: summarizeRepl.Rd:22-24: Dropping empty section \details
prepare_Rd: summarizeRepl.Rd:34-36: Dropping empty section \note
prepare_Rd: summarizeRepl.Rd:31-33: Dropping empty section \author
prepare_Rd: summarizeRepl.Rd:28-30: Dropping empty section \references
prepare_Rd: summarizeRepl.Rd:40-41: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'vignette_lpNet.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/lpNet.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'lpNet' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'lpNet' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'lpNet' as lpNet_1.2.0.zip
* DONE (lpNet)