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BioC 2.13: BUILD BIN report for girafe on perceval

This page was generated on 2014-04-05 09:52:25 -0700 (Sat, 05 Apr 2014).

Package 310/750HostnameOS / ArchBUILDCHECKBUILD BIN
girafe 1.14.0
J. Toedling
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/girafe
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: girafe
Version: 1.14.0
Command: rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh girafe_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R girafe.buildbin-libdir
StartedAt: 2014-04-05 05:24:59 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:25:34 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 34.8 seconds
RetCode: 0
Status:  OK 
PackageFile: girafe_1.14.0.tgz
PackageFileSize: 1.535 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=girafe.buildbin-libdir girafe_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘girafe’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c coverage.cpp -o coverage.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c girafe_init.c -o girafe_init.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o girafe.so coverage.o girafe_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/girafe.buildbin-libdir/girafe/libs
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘intervals::coerce’ when loading ‘genomeIntervals’
Warning: replacing previous import by ‘intervals::initialize’ when loading ‘genomeIntervals’
Creating a generic function for ‘hist’ from package ‘graphics’ in package ‘girafe’
Creating a generic function for ‘sample’ from package ‘base’ in package ‘girafe’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by ‘intervals::coerce’ when loading ‘genomeIntervals’
Warning: replacing previous import by ‘intervals::initialize’ when loading ‘genomeIntervals’
* DONE (girafe)


>>>>>>> 
>>>>>>> FIXING LINKS FOR girafe.buildbin-libdir/girafe/libs//girafe.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "girafe.buildbin-libdir/girafe/libs//girafe.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "girafe.buildbin-libdir/girafe/libs//girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "girafe.buildbin-libdir/girafe/libs//girafe.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "girafe.buildbin-libdir/girafe/libs//girafe.so"