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BioC 2.13: BUILD BIN report for eiR on perceval

This page was generated on 2014-04-05 09:53:04 -0700 (Sat, 05 Apr 2014).

Package 227/750HostnameOS / ArchBUILDCHECKBUILD BIN
eiR 1.2.0
Kevin Horan
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/eiR
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 N O T   S U P P O R T E D
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: eiR
Version: 1.2.0
Command: rm -rf eiR.buildbin-libdir && mkdir eiR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh eiR_1.2.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R eiR.buildbin-libdir
StartedAt: 2014-04-05 05:21:17 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:22:00 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 43.3 seconds
RetCode: 0
Status:  OK 
PackageFile: eiR_1.2.0.tgz
PackageFileSize: 445.8 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=eiR.buildbin-libdir eiR_1.2.0.tar.gz'
>>>>>>> 

* installing *source* package ‘eiR’ ...
removing exploded boost header source...
rm -f libf2c.a *.o arith.h signal1.h sysdep1.h
untarring boost include tree...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c apost.cpp -o apost.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c char_bit_cnt.cpp -o char_bit_cnt.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c embedCoords.cc -o embedCoords.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c eucsearch.cc -o eucsearch.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c format.cc -o format.o
format.cc: In function ‘int binaryCoord(char*, char*, int)’:
format.cc:54: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c mplsh-model.cpp -o mplsh-model.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c mplsh.cpp -o mplsh.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c profiling.cc -o profiling.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c r_wrap.cpp -o r_wrap.o
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c recordfile.cc -o recordfile.o
recordfile.cc: In function ‘int read_file(const char*, int&, std::vector<double, std::allocator<double> >&, std::vector<int, std::allocator<int> >&, bool)’:
recordfile.cc:45: warning: comparison between signed and unsigned integer expressions
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c routines.c -o routines.o
routines.c: In function ‘dcsrch_’:
routines.c:4466: warning: suggest parentheses around && within ||
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c scan.cc -o scan.o
scan.cc: In function ‘int eucsearch(const char*, const char*, int, std::ostream&)’:
scan.cc:54: warning: comparison between signed and unsigned integer expressions
scan.cc:56: warning: comparison between signed and unsigned integer expressions
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c search_r.cpp -o search_r.o
search_r.cpp: In function ‘int loadIndex(Index&, lshkit::FloatMatrix&, std::string&, float, unsigned int, unsigned int, unsigned int)’:
search_r.cpp:77: warning: comparison between signed and unsigned integer expressions
search_r.cpp: In function ‘SEXPREC* lshsearchAll(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
search_r.cpp:146: warning: unused variable ‘cnt’
search_r.cpp:136: warning: unused variable ‘querySize’
search_r.cpp:142: warning: unused variable ‘k’
search_r.cpp: In function ‘SEXPREC* query(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)’:
search_r.cpp:273: warning: unused variable ‘cnt’
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include   -DNO_MAIN -Iinclude -I. -Itrimmed_boost_1_49_0 -fPIC  -mtune=core2 -g -O2 -Wall  -c solver.cc -o solver.o
solver.cc: In destructor ‘Solver::˜Solver()’:
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc:38: warning: right-hand operand of comma has no effect
solver.cc: In member function ‘int Solver::optim(doublereal*, doublereal*, doublereal, doublereal)’:
solver.cc:91: warning: unused variable ‘buf’
cp signal1.h0 signal1.h
cp sysdep1.h0 sysdep1.h
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c f77vers.c
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c i77vers.c
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC main.c
main.c:57: warning: ‘sigfdie’ defined but not used
main.c:64: warning: ‘sigidie’ defined but not used
main.c:71: warning: ‘sigqdie’ defined but not used
main.c:79: warning: ‘sigindie’ defined but not used
main.c:85: warning: ‘sigtdie’ defined but not used
main.c:92: warning: ‘sigtrdie’ defined but not used
ld -r -x -o main.xxx main.o
mv main.xxx main.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC s_rnge.c
ld -r -x -o s_rnge.xxx s_rnge.o
mv s_rnge.xxx s_rnge.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC abort_.c
ld -r -x -o abort_.xxx abort_.o
mv abort_.xxx abort_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC exit_.c
ld -r -x -o exit_.xxx exit_.o
mv exit_.xxx exit_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC getarg_.c
ld -r -x -o getarg_.xxx getarg_.o
mv getarg_.xxx getarg_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC iargc_.c
ld -r -x -o iargc_.xxx iargc_.o
mv iargc_.xxx iargc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC getenv_.c
ld -r -x -o getenv_.xxx getenv_.o
mv getenv_.xxx getenv_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC signal_.c
ld -r -x -o signal_.xxx signal_.o
mv signal_.xxx signal_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC s_stop.c
ld -r -x -o s_stop.xxx s_stop.o
mv s_stop.xxx s_stop.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC s_paus.c
s_paus.c:30: warning: ‘waitpause’ defined but not used
s_paus.c:41: warning: ‘s_1paus’ defined but not used
ld -r -x -o s_paus.xxx s_paus.o
mv s_paus.xxx s_paus.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC system_.c
ld -r -x -o system_.xxx system_.o
mv system_.xxx system_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC cabs.c
ld -r -x -o cabs.xxx cabs.o
mv cabs.xxx cabs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC ctype.c
ld -r -x -o ctype.xxx ctype.o
mv ctype.xxx ctype.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC derf_.c
ld -r -x -o derf_.xxx derf_.o
mv derf_.xxx derf_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC derfc_.c
ld -r -x -o derfc_.xxx derfc_.o
mv derfc_.xxx derfc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC erf_.c
ld -r -x -o erf_.xxx erf_.o
mv erf_.xxx erf_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC erfc_.c
ld -r -x -o erfc_.xxx erfc_.o
mv erfc_.xxx erfc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC sig_die.c
ld -r -x -o sig_die.xxx sig_die.o
mv sig_die.xxx sig_die.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -o a.out -mtune=core2 -g -O2 -Wall  -fPIC -DNO_FPINIT arithchk.c -lm ||\
	 llvm-gcc-4.2 -arch x86_64 -std=gnu99 -o a.out -DNO_LONG_LONG -mtune=core2 -g -O2 -Wall  -fPIC -DNO_FPINIT arithchk.c -lm
arithchk.c: In function ‘ccheck’:
arithchk.c:125: warning: format not a string literal and no format arguments
./a.out >arith.h
rm -f a.out arithchk.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC uninit.c
ld -r -x -o uninit.xxx uninit.o
mv uninit.xxx uninit.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_ci.c
ld -r -x -o pow_ci.xxx pow_ci.o
mv pow_ci.xxx pow_ci.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_dd.c
ld -r -x -o pow_dd.xxx pow_dd.o
mv pow_dd.xxx pow_dd.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_di.c
ld -r -x -o pow_di.xxx pow_di.o
mv pow_di.xxx pow_di.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_hh.c
ld -r -x -o pow_hh.xxx pow_hh.o
mv pow_hh.xxx pow_hh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_ii.c
ld -r -x -o pow_ii.xxx pow_ii.o
mv pow_ii.xxx pow_ii.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_ri.c
ld -r -x -o pow_ri.xxx pow_ri.o
mv pow_ri.xxx pow_ri.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_zi.c
ld -r -x -o pow_zi.xxx pow_zi.o
mv pow_zi.xxx pow_zi.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC pow_zz.c
ld -r -x -o pow_zz.xxx pow_zz.o
mv pow_zz.xxx pow_zz.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_abs.c
ld -r -x -o c_abs.xxx c_abs.o
mv c_abs.xxx c_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_cos.c
ld -r -x -o c_cos.xxx c_cos.o
mv c_cos.xxx c_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_div.c
ld -r -x -o c_div.xxx c_div.o
mv c_div.xxx c_div.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_exp.c
ld -r -x -o c_exp.xxx c_exp.o
mv c_exp.xxx c_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_log.c
ld -r -x -o c_log.xxx c_log.o
mv c_log.xxx c_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_sin.c
ld -r -x -o c_sin.xxx c_sin.o
mv c_sin.xxx c_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC c_sqrt.c
ld -r -x -o c_sqrt.xxx c_sqrt.o
mv c_sqrt.xxx c_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_abs.c
ld -r -x -o z_abs.xxx z_abs.o
mv z_abs.xxx z_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_cos.c
ld -r -x -o z_cos.xxx z_cos.o
mv z_cos.xxx z_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_div.c
ld -r -x -o z_div.xxx z_div.o
mv z_div.xxx z_div.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_exp.c
ld -r -x -o z_exp.xxx z_exp.o
mv z_exp.xxx z_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_log.c
ld -r -x -o z_log.xxx z_log.o
mv z_log.xxx z_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_sin.c
ld -r -x -o z_sin.xxx z_sin.o
mv z_sin.xxx z_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC z_sqrt.c
ld -r -x -o z_sqrt.xxx z_sqrt.o
mv z_sqrt.xxx z_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_abs.c
ld -r -x -o r_abs.xxx r_abs.o
mv r_abs.xxx r_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_acos.c
ld -r -x -o r_acos.xxx r_acos.o
mv r_acos.xxx r_acos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_asin.c
ld -r -x -o r_asin.xxx r_asin.o
mv r_asin.xxx r_asin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_atan.c
ld -r -x -o r_atan.xxx r_atan.o
mv r_atan.xxx r_atan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_atn2.c
ld -r -x -o r_atn2.xxx r_atn2.o
mv r_atn2.xxx r_atn2.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_cnjg.c
ld -r -x -o r_cnjg.xxx r_cnjg.o
mv r_cnjg.xxx r_cnjg.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_cos.c
ld -r -x -o r_cos.xxx r_cos.o
mv r_cos.xxx r_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_cosh.c
ld -r -x -o r_cosh.xxx r_cosh.o
mv r_cosh.xxx r_cosh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_dim.c
ld -r -x -o r_dim.xxx r_dim.o
mv r_dim.xxx r_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_exp.c
ld -r -x -o r_exp.xxx r_exp.o
mv r_exp.xxx r_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_imag.c
ld -r -x -o r_imag.xxx r_imag.o
mv r_imag.xxx r_imag.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_int.c
ld -r -x -o r_int.xxx r_int.o
mv r_int.xxx r_int.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_lg10.c
ld -r -x -o r_lg10.xxx r_lg10.o
mv r_lg10.xxx r_lg10.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_log.c
ld -r -x -o r_log.xxx r_log.o
mv r_log.xxx r_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_mod.c
ld -r -x -o r_mod.xxx r_mod.o
mv r_mod.xxx r_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_nint.c
ld -r -x -o r_nint.xxx r_nint.o
mv r_nint.xxx r_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_sign.c
ld -r -x -o r_sign.xxx r_sign.o
mv r_sign.xxx r_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_sin.c
ld -r -x -o r_sin.xxx r_sin.o
mv r_sin.xxx r_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_sinh.c
ld -r -x -o r_sinh.xxx r_sinh.o
mv r_sinh.xxx r_sinh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_sqrt.c
ld -r -x -o r_sqrt.xxx r_sqrt.o
mv r_sqrt.xxx r_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_tan.c
ld -r -x -o r_tan.xxx r_tan.o
mv r_tan.xxx r_tan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC r_tanh.c
ld -r -x -o r_tanh.xxx r_tanh.o
mv r_tanh.xxx r_tanh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_abs.c
ld -r -x -o d_abs.xxx d_abs.o
mv d_abs.xxx d_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_acos.c
ld -r -x -o d_acos.xxx d_acos.o
mv d_acos.xxx d_acos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_asin.c
ld -r -x -o d_asin.xxx d_asin.o
mv d_asin.xxx d_asin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_atan.c
ld -r -x -o d_atan.xxx d_atan.o
mv d_atan.xxx d_atan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_atn2.c
ld -r -x -o d_atn2.xxx d_atn2.o
mv d_atn2.xxx d_atn2.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_cnjg.c
ld -r -x -o d_cnjg.xxx d_cnjg.o
mv d_cnjg.xxx d_cnjg.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_cos.c
ld -r -x -o d_cos.xxx d_cos.o
mv d_cos.xxx d_cos.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_cosh.c
ld -r -x -o d_cosh.xxx d_cosh.o
mv d_cosh.xxx d_cosh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_dim.c
ld -r -x -o d_dim.xxx d_dim.o
mv d_dim.xxx d_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_exp.c
ld -r -x -o d_exp.xxx d_exp.o
mv d_exp.xxx d_exp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_imag.c
ld -r -x -o d_imag.xxx d_imag.o
mv d_imag.xxx d_imag.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_int.c
ld -r -x -o d_int.xxx d_int.o
mv d_int.xxx d_int.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_lg10.c
ld -r -x -o d_lg10.xxx d_lg10.o
mv d_lg10.xxx d_lg10.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_log.c
ld -r -x -o d_log.xxx d_log.o
mv d_log.xxx d_log.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_mod.c
ld -r -x -o d_mod.xxx d_mod.o
mv d_mod.xxx d_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_nint.c
ld -r -x -o d_nint.xxx d_nint.o
mv d_nint.xxx d_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_prod.c
ld -r -x -o d_prod.xxx d_prod.o
mv d_prod.xxx d_prod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_sign.c
ld -r -x -o d_sign.xxx d_sign.o
mv d_sign.xxx d_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_sin.c
ld -r -x -o d_sin.xxx d_sin.o
mv d_sin.xxx d_sin.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_sinh.c
ld -r -x -o d_sinh.xxx d_sinh.o
mv d_sinh.xxx d_sinh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_sqrt.c
ld -r -x -o d_sqrt.xxx d_sqrt.o
mv d_sqrt.xxx d_sqrt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_tan.c
ld -r -x -o d_tan.xxx d_tan.o
mv d_tan.xxx d_tan.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC d_tanh.c
ld -r -x -o d_tanh.xxx d_tanh.o
mv d_tanh.xxx d_tanh.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_abs.c
ld -r -x -o i_abs.xxx i_abs.o
mv i_abs.xxx i_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_dim.c
ld -r -x -o i_dim.xxx i_dim.o
mv i_dim.xxx i_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_dnnt.c
ld -r -x -o i_dnnt.xxx i_dnnt.o
mv i_dnnt.xxx i_dnnt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_indx.c
ld -r -x -o i_indx.xxx i_indx.o
mv i_indx.xxx i_indx.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_len.c
ld -r -x -o i_len.xxx i_len.o
mv i_len.xxx i_len.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_mod.c
ld -r -x -o i_mod.xxx i_mod.o
mv i_mod.xxx i_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_nint.c
ld -r -x -o i_nint.xxx i_nint.o
mv i_nint.xxx i_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC i_sign.c
ld -r -x -o i_sign.xxx i_sign.o
mv i_sign.xxx i_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC lbitbits.c
lbitbits.c: In function ‘lbit_cshift’:
lbitbits.c:47: warning: suggest parentheses around + or - inside shift
lbitbits.c:51: warning: suggest parentheses around + or - inside shift
lbitbits.c:60: warning: suggest parentheses around + or - inside shift
lbitbits.c:60: warning: suggest parentheses around arithmetic in operand of |
lbitbits.c:64: warning: suggest parentheses around + or - inside shift
lbitbits.c:64: warning: suggest parentheses around arithmetic in operand of |
ld -r -x -o lbitbits.xxx lbitbits.o
mv lbitbits.xxx lbitbits.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC lbitshft.c
ld -r -x -o lbitshft.xxx lbitshft.o
mv lbitshft.xxx lbitshft.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_abs.c
ld -r -x -o h_abs.xxx h_abs.o
mv h_abs.xxx h_abs.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_dim.c
ld -r -x -o h_dim.xxx h_dim.o
mv h_dim.xxx h_dim.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_dnnt.c
ld -r -x -o h_dnnt.xxx h_dnnt.o
mv h_dnnt.xxx h_dnnt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_indx.c
ld -r -x -o h_indx.xxx h_indx.o
mv h_indx.xxx h_indx.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_len.c
ld -r -x -o h_len.xxx h_len.o
mv h_len.xxx h_len.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_mod.c
ld -r -x -o h_mod.xxx h_mod.o
mv h_mod.xxx h_mod.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_nint.c
ld -r -x -o h_nint.xxx h_nint.o
mv h_nint.xxx h_nint.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC h_sign.c
ld -r -x -o h_sign.xxx h_sign.o
mv h_sign.xxx h_sign.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC l_ge.c
ld -r -x -o l_ge.xxx l_ge.o
mv l_ge.xxx l_ge.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC l_gt.c
ld -r -x -o l_gt.xxx l_gt.o
mv l_gt.xxx l_gt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC l_le.c
ld -r -x -o l_le.xxx l_le.o
mv l_le.xxx l_le.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC l_lt.c
ld -r -x -o l_lt.xxx l_lt.o
mv l_lt.xxx l_lt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC hl_ge.c
ld -r -x -o hl_ge.xxx hl_ge.o
mv hl_ge.xxx hl_ge.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC hl_gt.c
ld -r -x -o hl_gt.xxx hl_gt.o
mv hl_gt.xxx hl_gt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC hl_le.c
ld -r -x -o hl_le.xxx hl_le.o
mv hl_le.xxx hl_le.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC hl_lt.c
ld -r -x -o hl_lt.xxx hl_lt.o
mv hl_lt.xxx hl_lt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC ef1asc_.c
ld -r -x -o ef1asc_.xxx ef1asc_.o
mv ef1asc_.xxx ef1asc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC ef1cmc_.c
ld -r -x -o ef1cmc_.xxx ef1cmc_.o
mv ef1cmc_.xxx ef1cmc_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC f77_aloc.c
ld -r -x -o f77_aloc.xxx f77_aloc.o
mv f77_aloc.xxx f77_aloc.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC s_cat.c
ld -r -x -o s_cat.xxx s_cat.o
mv s_cat.xxx s_cat.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC s_cmp.c
ld -r -x -o s_cmp.xxx s_cmp.o
mv s_cmp.xxx s_cmp.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC s_copy.c
ld -r -x -o s_copy.xxx s_copy.o
mv s_copy.xxx s_copy.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC backspac.c
ld -r -x -o backspac.xxx backspac.o
mv backspac.xxx backspac.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC close.c
ld -r -x -o close.xxx close.o
mv close.xxx close.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC dfe.c
dfe.c: In function ‘s_rdfe’:
dfe.c:104: warning: suggest parentheses around assignment used as truth value
dfe.c: In function ‘s_wdfe’:
dfe.c:126: warning: suggest parentheses around assignment used as truth value
ld -r -x -o dfe.xxx dfe.o
mv dfe.xxx dfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC dolio.c
ld -r -x -o dolio.xxx dolio.o
mv dolio.xxx dolio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC due.c
due.c: In function ‘s_rdue’:
due.c:40: warning: suggest parentheses around assignment used as truth value
due.c: In function ‘s_wdue’:
due.c:53: warning: suggest parentheses around assignment used as truth value
ld -r -x -o due.xxx due.o
mv due.xxx due.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC endfile.c
endfile.c: In function ‘f_end’:
endfile.c:46: warning: suggest parentheses around assignment used as truth value
ld -r -x -o endfile.xxx endfile.o
mv endfile.xxx endfile.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC err.c
ld -r -x -o err.xxx err.o
mv err.xxx err.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC fmt.c
ld -r -x -o fmt.xxx fmt.o
mv fmt.xxx fmt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC fmtlib.c
ld -r -x -o fmtlib.xxx fmtlib.o
mv fmtlib.xxx fmtlib.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC ftell_.c
ld -r -x -o ftell_.xxx ftell_.o
mv ftell_.xxx ftell_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC iio.c
iio.c: In function ‘s_rsfi’:
iio.c:91: warning: suggest parentheses around assignment used as truth value
iio.c: In function ‘s_wsfi’:
iio.c:123: warning: suggest parentheses around assignment used as truth value
ld -r -x -o iio.xxx iio.o
mv iio.xxx iio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC ilnw.c
ld -r -x -o ilnw.xxx ilnw.o
mv ilnw.xxx ilnw.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC inquire.c
inquire.c: In function ‘f_inqu’:
inquire.c:67: warning: suggest parentheses around && within ||
inquire.c:66: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:70: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:75: warning: suggest parentheses around && within ||
inquire.c:74: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:78: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:83: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:87: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:91: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:95: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:99: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:103: warning: suggest explicit braces to avoid ambiguous ‘else’
inquire.c:112: warning: suggest explicit braces to avoid ambiguous ‘else’
ld -r -x -o inquire.xxx inquire.o
mv inquire.xxx inquire.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC lread.c
lread.c: In function ‘l_C’:
lread.c:294: warning: suggest explicit braces to avoid ambiguous ‘else’
lread.c:317: warning: suggest parentheses around assignment used as truth value
lread.c:329: warning: suggest parentheses around assignment used as truth value
lread.c: In function ‘nmL_getc’:
lread.c:356: warning: suggest parentheses around assignment used as truth value
lread.c: In function ‘l_L’:
lread.c:438: warning: suggest explicit braces to avoid ambiguous ‘else’
lread.c: In function ‘l_read’:
lread.c:693: warning: suggest parentheses around assignment used as truth value
lread.c:698: warning: suggest parentheses around assignment used as truth value
lread.c:709: warning: suggest parentheses around assignment used as truth value
lread.c:714: warning: suggest parentheses around assignment used as truth value
lread.c:717: warning: suggest parentheses around assignment used as truth value
lread.c: In function ‘s_rsle’:
lread.c:790: warning: suggest parentheses around assignment used as truth value
ld -r -x -o lread.xxx lread.o
mv lread.xxx lread.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC lwrite.c
lwrite.c: In function ‘l_g’:
lwrite.c:141: warning: suggest parentheses around assignment used as truth value
lwrite.c:166: warning: suggest parentheses around assignment used as truth value
lwrite.c: In function ‘l_put’:
lwrite.c:190: warning: suggest parentheses around assignment used as truth value
ld -r -x -o lwrite.xxx lwrite.o
mv lwrite.xxx lwrite.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC open.c
open.c: In function ‘f_open’:
open.c:246: warning: suggest parentheses around assignment used as truth value
open.c:256: warning: suggest parentheses around assignment used as truth value
open.c:258: warning: suggest parentheses around assignment used as truth value
open.c:270: warning: suggest explicit braces to avoid ambiguous ‘else’
ld -r -x -o open.xxx open.o
mv open.xxx open.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC rdfmt.c
rdfmt.c: In function ‘rd_Z’:
rdfmt.c:39: warning: suggest parentheses around assignment used as truth value
rdfmt.c:42: warning: suggest parentheses around assignment used as truth value
rdfmt.c:71: warning: suggest parentheses around + or - inside shift
rdfmt.c:93: warning: suggest parentheses around + or - inside shift
rdfmt.c:93: warning: suggest parentheses around arithmetic in operand of |
ld -r -x -o rdfmt.xxx rdfmt.o
mv rdfmt.xxx rdfmt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC rewind.c
ld -r -x -o rewind.xxx rewind.o
mv rewind.xxx rewind.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC rsfe.c
rsfe.c: In function ‘s_rsfe’:
rsfe.c:67: warning: suggest parentheses around assignment used as truth value
ld -r -x -o rsfe.xxx rsfe.o
mv rsfe.xxx rsfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC rsli.c
ld -r -x -o rsli.xxx rsli.o
mv rsli.xxx rsli.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC rsne.c
rsne.c: In function ‘hash’:
rsne.c:86: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘mk_hashtab’:
rsne.c:107: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘nl_init’:
rsne.c:159: warning: suggest parentheses around assignment used as truth value
rsne.c:165: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘getname’:
rsne.c:188: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘getdimen’:
rsne.c:243: warning: suggest parentheses around assignment used as truth value
rsne.c:247: warning: suggest parentheses around assignment used as truth value
rsne.c:251: warning: suggest parentheses around assignment used as truth value
rsne.c: In function ‘x_rsne’:
rsne.c:349: warning: suggest parentheses around assignment used as truth value
rsne.c:401: warning: suggest parentheses around && within ||
rsne.c:404: warning: suggest parentheses around assignment used as truth value
rsne.c:429: warning: suggest parentheses around assignment used as truth value
rsne.c:445: warning: suggest parentheses around assignment used as truth value
rsne.c:457: warning: suggest parentheses around assignment used as truth value
rsne.c:476: warning: suggest parentheses around assignment used as truth value
rsne.c:511: warning: suggest parentheses around assignment used as truth value
rsne.c:531: warning: suggest parentheses around assignment used as truth value
rsne.c:542: warning: suggest parentheses around assignment used as truth value
rsne.c:549: warning: suggest explicit braces to avoid ambiguous ‘else’
rsne.c: In function ‘s_rsne’:
rsne.c:603: warning: suggest parentheses around assignment used as truth value
ld -r -x -o rsne.xxx rsne.o
mv rsne.xxx rsne.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC sfe.c
ld -r -x -o sfe.xxx sfe.o
mv sfe.xxx sfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC sue.c
sue.c: In function ‘s_rsue’:
sue.c:38: warning: suggest parentheses around assignment used as truth value
sue.c: In function ‘s_wsue’:
sue.c:61: warning: suggest parentheses around assignment used as truth value
ld -r -x -o sue.xxx sue.o
mv sue.xxx sue.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC typesize.c
ld -r -x -o typesize.xxx typesize.o
mv typesize.xxx typesize.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC uio.c
ld -r -x -o uio.xxx uio.o
mv uio.xxx uio.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC util.c
ld -r -x -o util.xxx util.o
mv util.xxx util.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC wref.c
wref.c: In function ‘wrt_E’:
wref.c:140: warning: suggest parentheses around assignment used as truth value
wref.c: In function ‘wrt_F’:
wref.c:236: warning: suggest parentheses around assignment used as truth value
wref.c:236: warning: suggest explicit braces to avoid ambiguous ‘else’
wref.c:286: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wref.xxx wref.o
mv wref.xxx wref.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC wrtfmt.c
ld -r -x -o wrtfmt.xxx wrtfmt.o
mv wrtfmt.xxx wrtfmt.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC wsfe.c
wsfe.c: In function ‘s_wsfe’:
wsfe.c:55: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wsfe.xxx wsfe.o
mv wsfe.xxx wsfe.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC wsle.c
wsle.c: In function ‘s_wsle’:
wsle.c:17: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wsle.xxx wsle.o
mv wsle.xxx wsle.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC wsne.c
wsne.c: In function ‘s_wsne’:
wsne.c:17: warning: suggest parentheses around assignment used as truth value
ld -r -x -o wsne.xxx wsne.o
mv wsne.xxx wsne.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC xwsne.c
ld -r -x -o xwsne.xxx xwsne.o
mv xwsne.xxx xwsne.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC dtime_.c
ld -r -x -o dtime_.xxx dtime_.o
mv dtime_.xxx dtime_.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -c -DSkip_f2c_Undefs -mtune=core2 -g -O2 -Wall  -fPIC etime_.c
ld -r -x -o etime_.xxx etime_.o
mv etime_.xxx etime_.o
ar r libf2c.a f77vers.o i77vers.o main.o s_rnge.o abort_.o exit_.o getarg_.o iargc_.o getenv_.o signal_.o s_stop.o s_paus.o system_.o cabs.o ctype.o derf_.o derfc_.o erf_.o erfc_.o sig_die.o uninit.o pow_ci.o pow_dd.o pow_di.o pow_hh.o pow_ii.o pow_ri.o pow_zi.o pow_zz.o c_abs.o c_cos.o c_div.o c_exp.o c_log.o c_sin.o c_sqrt.o z_abs.o z_cos.o z_div.o z_exp.o z_log.o z_sin.o z_sqrt.o r_abs.o r_acos.o r_asin.o r_atan.o r_atn2.o r_cnjg.o r_cos.o r_cosh.o r_dim.o r_exp.o r_imag.o r_int.o r_lg10.o r_log.o r_mod.o r_nint.o r_sign.o r_sin.o r_sinh.o r_sqrt.o r_tan.o r_tanh.o d_abs.o d_acos.o d_asin.o d_atan.o d_atn2.o d_cnjg.o d_cos.o d_cosh.o d_dim.o d_exp.o d_imag.o d_int.o d_lg10.o d_log.o d_mod.o d_nint.o d_prod.o d_sign.o d_sin.o d_sinh.o d_sqrt.o d_tan.o d_tanh.o i_abs.o i_dim.o i_dnnt.o i_indx.o i_len.o i_mod.o i_nint.o i_sign.o lbitbits.o lbitshft.o h_abs.o h_dim.o h_dnnt.o h_indx.o h_len.o h_mod.o h_nint.o h_sign.o l_ge.o l_gt.o l_le.o l_lt.o hl_ge.o hl_gt.o hl_le.o hl_lt.o ef1asc_.o ef1cmc_.o f77_aloc.o s_cat.o s_cmp.o s_copy.o backspac.o close.o dfe.o dolio.o due.o endfile.o err.o fmt.o fmtlib.o ftell_.o iio.o ilnw.o inquire.o lread.o lwrite.o open.o rdfmt.o rewind.o rsfe.o rsli.o rsne.o sfe.o sue.o typesize.o uio.o util.o wref.o wrtfmt.o wsfe.o wsle.o wsne.o xwsne.o dtime_.o etime_.o
ar: creating archive libf2c.a
/usr/bin/ranlib: file: libf2c.a(s_paus.o) has no symbols
ranlib libf2c.a
ranlib: file: libf2c.a(s_paus.o) has no symbols
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o eiR.so apost.o char_bit_cnt.o embedCoords.o eucsearch.o format.o mplsh-model.o mplsh.o profiling.o r_wrap.o recordfile.o routines.o scan.o search_r.o solver.o -lm -Lf2c -lf2c -L. -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/eiR.buildbin-libdir/eiR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (eiR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR eiR.buildbin-libdir/eiR/libs//eiR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "eiR.buildbin-libdir/eiR/libs//eiR.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "eiR.buildbin-libdir/eiR/libs//eiR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "eiR.buildbin-libdir/eiR/libs//eiR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "eiR.buildbin-libdir/eiR/libs//eiR.so"