BioC 2.13: CHECK report for a4Reporting on moscato1

Package: a4Reporting

Version: 1.10.0

Command: rm -rf a4Reporting.buildbin-libdir && mkdir a4Reporting.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4Reporting.buildbin-libdir a4Reporting_1.10.0.tar.gz >a4Reporting-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=a4Reporting.buildbin-libdir --install="check:a4Reporting-install.out" --force-multiarch --no-vignettes --timings a4Reporting_1.10.0.tar.gz && mv a4Reporting.buildbin-libdir/* a4Reporting.Rcheck/ && rmdir a4Reporting.buildbin-libdir

StartedAt: 2014-04-05 01:57:20 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 01:59:42 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 142.4 seconds

RetCode: 0

Status:  OK

CheckDir: a4Reporting.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/a4Reporting.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4Reporting/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Reporting' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'a4Reporting' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'annaffy' 'methods'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
Unexported objects imported by ':::' calls:
  'xtable:::xtable.data.frame' 'xtable:::xtable.matrix'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'print.xtableAnnotationTable':
  'print.xtableAnnotationTable'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [4s] OK
** running examples for arch 'x64' ... [4s] OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386'
  Running 'test.annotationTable.R' [7s]
 [7s] OK
** running tests for arch 'x64'
  Running 'test.annotationTable.R' [7s]
 [7s] OK
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/a4Reporting.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'a4Reporting' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'a4Reporting' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Reporting' as a4Reporting_1.10.0.zip
* DONE (a4Reporting)

name	user	system	elapsed
annotationTable-class	0	0	0
annotationTable	0	0	0
xtable-methods	0.02	0.00	0.02

name	user	system	elapsed
annotationTable-class	0.01	0.00	0.01
annotationTable	0.02	0.00	0.02
xtable-methods	0.02	0.00	0.02