BioC 2.13: CHECK report for CoCiteStats on moscato1

Package: CoCiteStats

Version: 1.34.0

Command: rm -rf CoCiteStats.buildbin-libdir && mkdir CoCiteStats.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=CoCiteStats.buildbin-libdir CoCiteStats_1.34.0.tar.gz >CoCiteStats-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=CoCiteStats.buildbin-libdir --install="check:CoCiteStats-install.out" --force-multiarch --no-vignettes --timings CoCiteStats_1.34.0.tar.gz && mv CoCiteStats.buildbin-libdir/* CoCiteStats.Rcheck/ && rmdir CoCiteStats.buildbin-libdir

StartedAt: 2014-04-05 03:14:51 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 03:21:51 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 420.2 seconds

RetCode: 0

Status:  OK

CheckDir: CoCiteStats.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/CoCiteStats.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CoCiteStats/DESCRIPTION' ... OK
* this is package 'CoCiteStats' version '1.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'CoCiteStats' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'org.Hs.eg.db'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: gene.geneslist.statistic.Rd:19-21: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [144s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
actorAdjTable            29.08   1.25   30.50
gene.geneslist.sig       21.81   0.23   22.04
twowayTable              18.25   0.08   18.33
gene.geneslist.statistic 18.28   0.03   18.36
gene.gene.statistic      17.79   0.08   17.87
paperLen                 16.57   0.03   16.60
twTStats                 16.48   0.02   16.48
** running examples for arch 'x64' ... [159s] OK
Examples with CPU or elapsed time > 5s
                          user system elapsed
actorAdjTable            35.10   1.70   37.30
gene.geneslist.sig       25.52   0.56   26.08
paperLen                 18.79   0.08   18.88
gene.gene.statistic      18.19   0.12   18.32
twowayTable              17.91   0.11   18.02
twTStats                 17.91   0.05   17.95
gene.geneslist.statistic 17.69   0.12   17.82
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/CoCiteStats.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'CoCiteStats' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'CoCiteStats' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CoCiteStats' as CoCiteStats_1.34.0.zip
* DONE (CoCiteStats)

name	user	system	elapsed
actorAdjTable	29.08	1.25	30.50
gene.gene.statistic	17.79	0.08	17.87
gene.geneslist.sig	21.81	0.23	22.04
gene.geneslist.statistic	18.28	0.03	18.36
paperLen	16.57	0.03	16.60
twTStats	16.48	0.02	16.48
twowayTable	18.25	0.08	18.33

name	user	system	elapsed
actorAdjTable	35.1	1.7	37.3
gene.gene.statistic	18.19	0.12	18.32
gene.geneslist.sig	25.52	0.56	26.08
gene.geneslist.statistic	17.69	0.12	17.82
paperLen	18.79	0.08	18.88
twTStats	17.91	0.05	17.95
twowayTable	17.91	0.11	18.02