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BioC 2.13: CHECK report for supraHex on moscato1

This page was generated on 2014-04-05 09:51:28 -0700 (Sat, 05 Apr 2014).

Package 700/750HostnameOS / ArchBUILDCHECKBUILD BIN
supraHex 1.0.0
Hai Fang
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/supraHex
Last Changed Rev: 81642 / Revision: 88450
Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK [ OK ] OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK 

Summary

Package: supraHex
Version: 1.0.0
Command: rm -rf supraHex.buildbin-libdir && mkdir supraHex.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=supraHex.buildbin-libdir supraHex_1.0.0.tar.gz >supraHex-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=supraHex.buildbin-libdir --install="check:supraHex-install.out" --force-multiarch --no-vignettes --timings supraHex_1.0.0.tar.gz && mv supraHex.buildbin-libdir/* supraHex.Rcheck/ && rmdir supraHex.buildbin-libdir
StartedAt: 2014-04-05 07:05:02 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 07:06:57 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 114.7 seconds
RetCode: 0
Status:  OK  
CheckDir: supraHex.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/supraHex.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'supraHex/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'supraHex' version '1.0.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'supraHex' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'Biobase'
  All declared Imports should be used.
Package in Depends field not imported from: 'hexbin'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [25s] OK
** running examples for arch 'x64' ... [25s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'D:/biocbld/bbs-2.13-bioc/meat/supraHex.Rcheck/00check.log'
for details.

supraHex.Rcheck/00install.out:


install for i386

* installing *source* package 'supraHex' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'supraHex' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'supraHex' as supraHex_1.0.0.zip
* DONE (supraHex)

supraHex.Rcheck/examples_i386/supraHex-Ex.timings:

nameusersystemelapsed
sBMH2.530.022.63
sCompReorder1.500.002.28
sDistance0.110.000.11
sDmat0.190.000.19
sDmatCluster0.250.000.25
sDmatMinima0.160.000.15
sHexDist0.010.000.02
sHexGrid0.050.000.04
sInitial0.010.000.02
sNeighAny0.020.000.01
sNeighDirect0.020.000.02
sPipeline0.710.001.34
sTopology0.100.020.11
sTrainBatch0.090.000.09
sTrainSeq2.340.012.57
sTrainology0.010.000.02
sWriteData0.240.000.23
visColorbar0.060.000.06
visColormap0.010.000.01
visCompReorder2.050.022.06
visDmatCluster0.230.010.25
visHexComp0.140.000.14
visHexGrid0.140.000.14
visHexMapping2.190.052.23
visHexMulComp1.200.031.24
visHexPattern2.150.134.92
visKernels0.050.000.82
visVp0.050.030.26

supraHex.Rcheck/examples_x64/supraHex-Ex.timings:

nameusersystemelapsed
sBMH3.000.023.01
sCompReorder2.570.003.12
sDistance0.220.000.22
sDmat0.330.000.33
sDmatCluster0.390.030.42
sDmatMinima0.160.000.15
sHexDist000
sHexGrid000
sInitial000
sNeighAny0.030.000.03
sNeighDirect0.050.000.05
sPipeline0.700.021.25
sTopology0.060.030.09
sTrainBatch0.110.000.11
sTrainSeq2.810.013.65
sTrainology0.010.000.02
sWriteData0.250.000.25
visColorbar0.060.000.07
visColormap000
visCompReorder2.160.032.18
visDmatCluster0.450.020.47
visHexComp0.250.000.25
visHexGrid0.160.000.15
visHexMapping2.570.092.67
visHexMulComp1.440.021.45
visHexPattern2.460.122.59
visKernels0.030.020.22
visVp0.110.000.10