BioC 2.13: CHECK report for sRAP on moscato1
This page was generated on 2014-04-05 09:51:33 -0700 (Sat, 05 Apr 2014).
sRAP 1.4.0 Charles Warden
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/sRAP | Last Changed Rev: 87728 / Revision: 88450 | Last Changed Date: 2014-03-21 16:27:48 -0700 (Fri, 21 Mar 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: sRAP
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Version: 1.4.0
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Command: rm -rf sRAP.buildbin-libdir && mkdir sRAP.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=sRAP.buildbin-libdir sRAP_1.4.0.tar.gz >sRAP-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=sRAP.buildbin-libdir --install="check:sRAP-install.out" --force-multiarch --no-vignettes --timings sRAP_1.4.0.tar.gz && mv sRAP.buildbin-libdir/* sRAP.Rcheck/ && rmdir sRAP.buildbin-libdir
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StartedAt: 2014-04-05 06:58:56 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 07:03:16 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 260.1 seconds
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RetCode: 0
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Status: OK
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CheckDir: sRAP.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/sRAP.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'sRAP/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'sRAP' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'sRAP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RNA.bdfunc.fc: no visible binding for global variable
'bdfunc.enrichment.human'
RNA.bdfunc.fc: no visible binding for global variable
'bdfunc.enrichment.mouse'
RNA.bdfunc.signal: no visible binding for global variable
'bdfunc.enrichment.human'
RNA.bdfunc.signal: no visible binding for global variable
'bdfunc.enrichment.mouse'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [103s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
RNA.bdfunc.signal 39.03 0.02 45.58
RNA.deg 14.21 0.09 21.71
RNA.bdfunc.fc 13.79 0.03 22.99
RNA.qc 3.71 0.01 6.67
** running examples for arch 'x64' ... [118s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
RNA.bdfunc.signal 52.15 0.06 59.79
RNA.deg 17.24 0.09 24.69
RNA.bdfunc.fc 15.76 0.06 22.97
RNA.qc 2.20 0.02 5.21
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'D:/biocbld/bbs-2.13-bioc/meat/sRAP.Rcheck/00check.log'
for details.
sRAP.Rcheck/00install.out:
install for i386
* installing *source* package 'sRAP' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'sRAP' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'sRAP' as sRAP_1.4.0.zip
* DONE (sRAP)
sRAP.Rcheck/examples_i386/sRAP-Ex.timings:
name | user | system | elapsed
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RNA.bdfunc.fc | 13.79 | 0.03 | 22.99 |
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RNA.bdfunc.signal | 39.03 | 0.02 | 45.58 |
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RNA.deg | 14.21 | 0.09 | 21.71 |
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RNA.norm | 2.68 | 0.00 | 4.54 |
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RNA.prepare.input | 0.02 | 0.02 | 0.24 |
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RNA.qc | 3.71 | 0.01 | 6.67 |
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sRAP.Rcheck/examples_x64/sRAP-Ex.timings:
name | user | system | elapsed
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RNA.bdfunc.fc | 15.76 | 0.06 | 22.97 |
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RNA.bdfunc.signal | 52.15 | 0.06 | 59.79 |
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RNA.deg | 17.24 | 0.09 | 24.69 |
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RNA.norm | 2.11 | 0.02 | 3.98 |
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RNA.prepare.input | 0.01 | 0.00 | 0.22 |
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RNA.qc | 2.20 | 0.02 | 5.21 |
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