BioC 2.13: CHECK report for randPack on moscato1
This page was generated on 2014-04-05 09:50:22 -0700 (Sat, 05 Apr 2014).
randPack 1.8.0 Robert Gentleman
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/randPack | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: randPack
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Version: 1.8.0
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Command: rm -rf randPack.buildbin-libdir && mkdir randPack.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=randPack.buildbin-libdir randPack_1.8.0.tar.gz >randPack-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=randPack.buildbin-libdir --install="check:randPack-install.out" --force-multiarch --no-vignettes --timings randPack_1.8.0.tar.gz && mv randPack.buildbin-libdir/* randPack.Rcheck/ && rmdir randPack.buildbin-libdir
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StartedAt: 2014-04-05 06:07:45 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 06:08:39 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 54.0 seconds
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RetCode: 0
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Status: OK
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CheckDir: randPack.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/randPack.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'randPack/DESCRIPTION' ... OK
* this is package 'randPack' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'randPack' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
Artistic 2.0
Standardizable: TRUE
Standardized license specification:
Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: getTreatment.Rd:20-21: Dropping empty section \details
prepare_Rd: getTreatment.Rd:22-23: Dropping empty section \value
prepare_Rd: makeRandomizer.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'randPack.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [1s] OK
** running examples for arch 'x64' ... [1s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/randPack.Rcheck/00check.log'
for details.
randPack.Rcheck/00install.out:
install for i386
* installing *source* package 'randPack' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'randPack' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'randPack' as randPack_1.8.0.zip
* DONE (randPack)
randPack.Rcheck/examples_i386/randPack-Ex.timings:
name | user | system | elapsed
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CT1 | 0.02 | 0.00 | 0.01 |
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ClinicalExperiment-class | 0 | 0 | 0 |
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ClinicalTrial-class | 0.02 | 0.00 | 0.01 |
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PatientData-class | 0 | 0 | 0 |
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PatientID-class | 0 | 0 | 0 |
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Randomizer-class | 0 | 0 | 0 |
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SampleData | 0 | 0 | 0 |
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createTrial | 0.01 | 0.00 | 0.02 |
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getEnrolleeInfo | 0.00 | 0.01 | 0.02 |
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getTreatment | 0 | 0 | 0 |
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minimizePocSim | 0 | 0 | 0 |
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simPats | 0.02 | 0.00 | 0.02 |
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treatmentNames | 0 | 0 | 0 |
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randPack.Rcheck/examples_x64/randPack-Ex.timings:
name | user | system | elapsed
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CT1 | 0.04 | 0.00 | 0.05 |
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ClinicalExperiment-class | 0.02 | 0.00 | 0.01 |
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ClinicalTrial-class | 0 | 0 | 0 |
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PatientData-class | 0 | 0 | 0 |
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PatientID-class | 0 | 0 | 0 |
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Randomizer-class | 0 | 0 | 0 |
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SampleData | 0.02 | 0.00 | 0.02 |
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createTrial | 0.01 | 0.00 | 0.02 |
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getEnrolleeInfo | 0 | 0 | 0 |
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getTreatment | 0.02 | 0.00 | 0.01 |
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minimizePocSim | 0.01 | 0.00 | 0.02 |
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simPats | 0.05 | 0.00 | 0.04 |
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treatmentNames | 0 | 0 | 0 |
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