BioC 2.13: CHECK report for qusage on moscato1
This page was generated on 2014-04-05 09:51:28 -0700 (Sat, 05 Apr 2014).
qusage 1.2.0 Christopher Bolen
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/qusage | Last Changed Rev: 83489 / Revision: 88450 | Last Changed Date: 2013-11-21 01:29:31 -0800 (Thu, 21 Nov 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: qusage
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Version: 1.2.0
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Command: rm -rf qusage.buildbin-libdir && mkdir qusage.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=qusage.buildbin-libdir qusage_1.2.0.tar.gz >qusage-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=qusage.buildbin-libdir --install="check:qusage-install.out" --force-multiarch --no-vignettes --timings qusage_1.2.0.tar.gz && mv qusage.buildbin-libdir/* qusage.Rcheck/ && rmdir qusage.buildbin-libdir
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StartedAt: 2014-04-05 06:06:04 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 06:07:43 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 99.2 seconds
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RetCode: 0
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Status: OK
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CheckDir: qusage.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/qusage.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'qusage/DESCRIPTION' ... OK
* this is package 'qusage' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'qusage' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
'limma' 'methods'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [15s] OK
** running examples for arch 'x64' ... [15s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'D:/biocbld/bbs-2.13-bioc/meat/qusage.Rcheck/00check.log'
for details.
qusage.Rcheck/00install.out:
install for i386
* installing *source* package 'qusage' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'head' from package 'utils' in package 'qusage'
Creating a generic function for 'summary' from package 'base' in package 'qusage'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'qusage' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'qusage' as qusage_1.2.0.zip
* DONE (qusage)
qusage.Rcheck/examples_i386/qusage-Ex.timings:
name | user | system | elapsed
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aggregateGeneSet | 0.47 | 0.00 | 0.47 |
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calcVIF | 0.40 | 0.00 | 0.41 |
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getXcoords | 0.39 | 0.00 | 0.39 |
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makeComparison | 0.02 | 0.00 | 0.01 |
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pVal | 1.15 | 0.03 | 1.19 |
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plotCIs | 1.86 | 0.04 | 1.89 |
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plotCIsGenes | 0.37 | 0.00 | 0.37 |
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plotDensityCurves | 0.38 | 0.00 | 0.37 |
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plotGeneSetDistributions | 3.39 | 0.00 | 3.59 |
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qsTable | 1.83 | 0.01 | 1.84 |
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qusage | 1.77 | 0.03 | 1.81 |
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qusage.Rcheck/examples_x64/qusage-Ex.timings:
name | user | system | elapsed
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aggregateGeneSet | 0.59 | 0.00 | 0.59 |
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calcVIF | 0.47 | 0.03 | 0.50 |
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getXcoords | 0.45 | 0.00 | 0.45 |
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makeComparison | 0.03 | 0.00 | 0.03 |
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pVal | 1.30 | 0.04 | 1.33 |
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plotCIs | 1.59 | 0.06 | 1.65 |
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plotCIsGenes | 0.31 | 0.00 | 0.31 |
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plotDensityCurves | 0.36 | 0.00 | 0.36 |
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plotGeneSetDistributions | 3.26 | 0.01 | 3.27 |
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qsTable | 1.58 | 0.03 | 1.61 |
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qusage | 1.68 | 0.00 | 1.68 |
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