BioC 2.13: CHECK report for easyRNASeq on zin1
This page was generated on 2014-04-05 09:48:13 -0700 (Sat, 05 Apr 2014).
easyRNASeq 1.8.8 Nicolas Delhomme
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/easyRNASeq | Last Changed Rev: 88359 / Revision: 88450 | Last Changed Date: 2014-04-03 00:06:45 -0700 (Thu, 03 Apr 2014) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | [ OK ] | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: easyRNASeq |
Version: 1.8.8 |
Command: /home/biocbuild/bbs-2.13-bioc/R/bin/R CMD check --no-vignettes --timings easyRNASeq_1.8.8.tar.gz |
StartedAt: 2014-04-05 00:55:00 -0700 (Sat, 05 Apr 2014) |
EndedAt: 2014-04-05 00:58:54 -0700 (Sat, 05 Apr 2014) |
EllapsedTime: 234.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: easyRNASeq.Rcheck |
Warnings: 0 |
Command output
* using log directory ‘/home/biocbuild/bbs-2.13-bioc/meat/easyRNASeq.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘easyRNASeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘easyRNASeq’ version ‘1.8.8’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘easyRNASeq’ can be installed ... [24s/24s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
There are ::: calls to the package's namespace in its code. A package
almost never needs to use ::: for its own objects:
‘.convertToUCSC’
See the information on DESCRIPTION files in the chapter ‘Creating R
packages’ of the ‘Writing R Extensions’ manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [12s/12s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
‘/home/biocbuild/bbs-2.13-bioc/meat/easyRNASeq.Rcheck/00check.log’
for details.
easyRNASeq.Rcheck/00install.out:
* installing *source* package ‘easyRNASeq’ ...
** R
** inst
** preparing package for lazy loading
Warning: replacing previous import by ‘intervals::coerce’ when loading ‘genomeIntervals’
Warning: replacing previous import by ‘intervals::initialize’ when loading ‘genomeIntervals’
Creating a generic function for ‘print’ from package ‘base’ in package ‘easyRNASeq’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: replacing previous import by ‘intervals::coerce’ when loading ‘genomeIntervals’
Warning: replacing previous import by ‘intervals::initialize’ when loading ‘genomeIntervals’
* DONE (easyRNASeq)
easyRNASeq.Rcheck/easyRNASeq-Ex.timings:
name | user | system | elapsed
|
DESeq-edgeR-common-methods | 0.004 | 0.000 | 0.005 |
|
DESeq-methods | 0.004 | 0.000 | 0.004 |
|
GenomicRanges-methods | 0.008 | 0.000 | 0.007 |
|
IRanges-methods | 0.004 | 0.000 | 0.005 |
|
ShortRead-methods | 0.012 | 0.000 | 0.011 |
|
easyRNASeq-accessors | 0.008 | 0.000 | 0.007 |
|
easyRNASeq-annotation-methods | 0.004 | 0.000 | 0.007 |
|
easyRNASeq-class | 0.004 | 0.000 | 0.005 |
|
easyRNASeq-correction-methods | 0.008 | 0.000 | 0.008 |
|
easyRNASeq-count | 0.008 | 0.000 | 0.008 |
|
easyRNASeq-coverage-methods | 0.000 | 0.004 | 0.006 |
|
easyRNASeq-easyRNASeq | 0.008 | 0.000 | 0.009 |
|
easyRNASeq-island-methods | 0.008 | 0.000 | 0.009 |
|
easyRNASeq-package | 0.012 | 0.000 | 0.009 |
|
easyRNASeq-summarization-methods | 0.004 | 0.000 | 0.006 |
|
edgeR-methods | 0.004 | 0.000 | 0.004 |
|
genomeIntervals-methods | 0.000 | 0.000 | 0.004 |
|
parallel-methods | 0.004 | 0.000 | 0.003 |
|