BioC 2.13: CHECK report for daMA on perceval

Package: daMA

Version: 1.34.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch daMA_1.34.0.tar.gz

StartedAt: 2014-04-05 00:40:08 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 00:40:37 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 29.2 seconds

RetCode: 0

Status:  OK

CheckDir: daMA.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.13-bioc/meat/daMA.Rcheck’
* using R version 3.0.3 (2014-03-06)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘daMA/DESCRIPTION’ ... OK
* this is package ‘daMA’ version ‘1.34.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘daMA’ can be installed ... [2s/2s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: analyseMA.Rd:70: Dropping empty section \note
prepare_Rd: analyseMA.Rd:72: Dropping empty section \seealso
prepare_Rd: cmat.Rd:13-14: Dropping empty section \format
prepare_Rd: cmat.Rd:15-16: Dropping empty section \details
prepare_Rd: cmat.Rd:17-19: Dropping empty section \source
prepare_Rd: cmatB.AB.Rd:13-14: Dropping empty section \format
prepare_Rd: cmatB.AB.Rd:15-16: Dropping empty section \details
prepare_Rd: cmatB.AB.Rd:17-18: Dropping empty section \source
prepare_Rd: core.Rd:42: Dropping empty section \keyword
prepare_Rd: core.Rd:29-30: Dropping empty section \details
prepare_Rd: core.Rd:31-32: Dropping empty section \value
prepare_Rd: core.Rd:38: Dropping empty section \note
prepare_Rd: core.Rd:40: Dropping empty section \seealso
prepare_Rd: core.Rd:41: Dropping empty section \examples
prepare_Rd: data.3x2.Rd:15-16: Dropping empty section \details
prepare_Rd: data.3x2.Rd:21-22: Dropping empty section \references
prepare_Rd: designMA.Rd:66: Dropping empty section \note
prepare_Rd: designMA.Rd:68: Dropping empty section \seealso
prepare_Rd: id.3x2.Rd:14-15: Dropping empty section \details
prepare_Rd: id.3x2.Rd:16-17: Dropping empty section \source
prepare_Rd: id.3x2.Rd:18-19: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/Users/biocbuild/bbs-2.13-bioc/meat/daMA.Rcheck/00check.log’
for details.

* installing *source* package ‘daMA’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (daMA)

name	user	system	elapsed
analyseMA	0.006	0.001	0.007
cinfo	0.032	0.003	0.034
cinfoB.AB	0.006	0.001	0.006
cmat	0.005	0.001	0.006
cmatB.AB	0.005	0.001	0.005
data.3x2	0.148	0.008	0.156
designMA	0.062	0.001	0.062
designs.composite	0.006	0.003	0.009
id.3x2	0.008	0.003	0.010