BioC 2.13: CHECK report for biocViews on moscato1

Package: biocViews

Version: 1.30.1

Command: rm -rf biocViews.buildbin-libdir && mkdir biocViews.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=biocViews.buildbin-libdir biocViews_1.30.1.tar.gz >biocViews-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=biocViews.buildbin-libdir --install="check:biocViews-install.out" --force-multiarch --no-vignettes --timings biocViews_1.30.1.tar.gz && mv biocViews.buildbin-libdir/* biocViews.Rcheck/ && rmdir biocViews.buildbin-libdir

StartedAt: 2014-04-05 02:32:55 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 02:34:32 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 96.6 seconds

RetCode: 0

Status:  OK

CheckDir: biocViews.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/biocViews.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'biocViews/DESCRIPTION' ... OK
* this is package 'biocViews' version '1.30.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biocViews' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'Biobase'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Unexported objects imported by ':::' calls:
  'tools:::.build_news_db_from_package_NEWS_Rd'
  'tools:::.build_repository_package_db'
  'tools:::.get_standard_repository_db_fields'
  'tools:::.news_reader_default' 'tools:::.split_dependencies'
  'tools:::vignetteInfo'
  See the note in ?`:::` about the use of this operator.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getPackageNEWS : getNews: no visible binding for global variable
  'Version'
getReverseDepends : <anonymous>: no visible binding for global variable
  'Package'
validate_bioc_views: no visible binding for global variable
  'biocViewsVocab'
htmlDoc,BiocView: no visible binding for global variable 'stylesheet'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
  'HOWTO-BCV.Rnw', 'createReposHtml.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [5s] OK
** running examples for arch 'x64' ... [5s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There were 4 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/biocViews.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'biocViews' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'biocViews' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biocViews' as biocViews_1.30.1.zip
* DONE (biocViews)

name	user	system	elapsed
PackageDetail-class	0.26	0.00	0.26
biocViews-package	0.02	0.02	0.03
biocViewsVocab	0.01	0.00	0.02
getBiocSubViews	1.08	0.00	1.08
getBiocViews	0.89	0.01	0.91
getSubTerms	0.06	0.00	0.06
validation_tests	0	0	0

name	user	system	elapsed
PackageDetail-class	0.23	0.00	0.41
biocViews-package	0.03	0.00	0.03
biocViewsVocab	0.02	0.00	0.01
getBiocSubViews	0.84	0.02	0.89
getBiocViews	0.97	0.00	0.97
getSubTerms	0.05	0.00	0.05
validation_tests	0	0	0