adding: data/ (256 bytes security) (stored 0%)
adding: data/LDH.aap.ave.rda (188 bytes security) (deflated 8%)
adding: data/LDH.aap.rda (188 bytes security) (deflated 13%)
adding: data/LDH.amino.gapless.rda (188 bytes security) (deflated 43%)
adding: data/LDH.amino.pseudo.rda (188 bytes security) (deflated 9%)
adding: data/LDH.amino.rda (188 bytes security) (deflated 50%)
adding: data/LDH.groups.rda (188 bytes security) (stored 0%)
adding: data/LDH.rda (188 bytes security) (stored 0%)
adding: DESCRIPTION (188 bytes security) (deflated 40%)
adding: doc/ (256 bytes security) (stored 0%)
adding: doc/bgafun.pdf (188 bytes security) (deflated 7%)
adding: doc/bgafun.R (188 bytes security) (deflated 80%)
adding: doc/bgafun.rnw (188 bytes security) (deflated 64%)
adding: doc/Bibtext.bib (188 bytes security) (deflated 45%)
adding: doc/index.html (188 bytes security) (deflated 59%)
adding: doc/mystyle.bst (188 bytes security) (deflated 75%)
adding: help/ (256 bytes security) (stored 0%)
adding: help/aliases.rds (188 bytes security) (stored 0%)
adding: help/AnIndex (188 bytes security) (deflated 69%)
adding: help/bgafun.rdb (188 bytes security) (deflated 3%)
adding: help/bgafun.rdx (188 bytes security) (stored 0%)
adding: help/paths.rds (188 bytes security) (stored 0%)
adding: html/ (256 bytes security) (stored 0%)
adding: html/00Index.html (188 bytes security) (deflated 74%)
adding: html/R.css (188 bytes security) (deflated 70%)
adding: INDEX (188 bytes security) (deflated 71%)
adding: MD5 (188 bytes security) (deflated 43%)
adding: Meta/ (256 bytes security) (stored 0%)
adding: Meta/data.rds (188 bytes security) (stored 0%)
adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
adding: Meta/links.rds (188 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
adding: Meta/package.rds (188 bytes security) (stored 0%)
adding: Meta/Rd.rds (188 bytes security) (stored 0%)
adding: Meta/vignette.rds (188 bytes security) (stored 0%)
adding: NAMESPACE (188 bytes security) (deflated 27%)
adding: R/ (256 bytes security) (stored 0%)
adding: R/bgafun (188 bytes security) (deflated 41%)
adding: R/bgafun.rdb (188 bytes security) (deflated 4%)
adding: R/bgafun.rdx (188 bytes security) (stored 0%)
adding: sequences/ (256 bytes security) (stored 0%)
adding: sequences/LDH-MDH-PF00056.fasta (188 bytes security) (deflated 65%)