BioC 2.13: CHECK report for a4Classif on moscato1

Package: a4Classif

Version: 1.10.0

Command: rm -rf a4Classif.buildbin-libdir && mkdir a4Classif.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=a4Classif.buildbin-libdir a4Classif_1.10.0.tar.gz >a4Classif-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=a4Classif.buildbin-libdir --install="check:a4Classif-install.out" --force-multiarch --no-vignettes --timings a4Classif_1.10.0.tar.gz && mv a4Classif.buildbin-libdir/* a4Classif.Rcheck/ && rmdir a4Classif.buildbin-libdir

StartedAt: 2014-04-05 01:57:19 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 02:01:36 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 256.5 seconds

RetCode: 0

Status:  OK

CheckDir: a4Classif.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/a4Classif.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'a4Classif/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4Classif' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'a4Classif' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'a4Core'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'MLInterfaces' 'ROCR' 'a4Preproc' 'glmnet' 'methods' 'pamr'
  'varSelRF'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... [21s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
lassoClass 5.49   0.04    5.57
ROCcurve   5.17   0.14    5.81
** running examples for arch 'x64' ... [21s] OK
Examples with CPU or elapsed time > 5s
           user system elapsed
lassoClass 5.77   0.03    6.72
* checking PDF version of manual ... OK

NOTE: There were 2 notes.
See
  'D:/biocbld/bbs-2.13-bioc/meat/a4Classif.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'a4Classif' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'a4Classif' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Classif' as a4Classif_1.10.0.zip
* DONE (a4Classif)

name	user	system	elapsed
ROCcurve	5.17	0.14	5.81
lassoClass	5.49	0.04	5.57

name	user	system	elapsed
ROCcurve	4.96	0.03	5.00
lassoClass	5.77	0.03	6.72