BioC 2.13: CHECK report for Rolexa on moscato1
This page was generated on 2014-04-05 09:49:55 -0700 (Sat, 05 Apr 2014).
Rolexa 1.18.0 Jacques Rougemont
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/Rolexa | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: Rolexa
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Version: 1.18.0
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Command: rm -rf Rolexa.buildbin-libdir && mkdir Rolexa.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Rolexa.buildbin-libdir Rolexa_1.18.0.tar.gz >Rolexa-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=Rolexa.buildbin-libdir --install="check:Rolexa-install.out" --force-multiarch --no-vignettes --timings Rolexa_1.18.0.tar.gz && mv Rolexa.buildbin-libdir/* Rolexa.Rcheck/ && rmdir Rolexa.buildbin-libdir
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StartedAt: 2014-04-05 06:27:22 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 06:31:56 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 273.4 seconds
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RetCode: 0
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Status: OK
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CheckDir: Rolexa.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/Rolexa.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Rolexa/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Rolexa' version '1.18.0'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: 'fork'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Rolexa' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
'graphics' 'grDevices' 'methods' 'ShortRead'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ForkBatch: no visible binding for global variable 'Rolexa.env'
ForkBatch: no visible global function definition for 'fork'
ForkBatch: no visible global function definition for 'wait'
QualityBoxPlots: no visible binding for global variable 'Rolexa.env'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'Rolexa-vignette.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [20s] OK
** running examples for arch 'x64' ... [23s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
Model1 4.74 0.56 5.3
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
'D:/biocbld/bbs-2.13-bioc/meat/Rolexa.Rcheck/00check.log'
for details.
Rolexa.Rcheck/00install.out:
install for i386
* installing *source* package 'Rolexa' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'Rolexa' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Rolexa' as Rolexa_1.18.0.zip
* DONE (Rolexa)
Rolexa.Rcheck/examples_i386/Rolexa-Ex.timings:
name | user | system | elapsed
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Batch | 0.02 | 0.00 | 0.03 |
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Model1 | 3.79 | 0.64 | 4.65 |
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Model3 | 1.02 | 0.66 | 1.67 |
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Plots1 | 2.49 | 0.98 | 3.59 |
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Plots2 | 0.58 | 0.61 | 1.31 |
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Plots3 | 0.36 | 0.03 | 0.39 |
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Rolexa.Rcheck/examples_x64/Rolexa-Ex.timings:
name | user | system | elapsed
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Batch | 0.02 | 0.00 | 0.02 |
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Model1 | 4.74 | 0.56 | 5.30 |
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Model3 | 0.86 | 0.45 | 1.31 |
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Plots1 | 2.47 | 0.69 | 3.15 |
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Plots2 | 0.64 | 0.47 | 1.11 |
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Plots3 | 0.12 | 0.01 | 0.14 |
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