BioC 2.13: CHECK report for RankProd on moscato1
This page was generated on 2014-04-05 09:49:11 -0700 (Sat, 05 Apr 2014).
RankProd 2.34.0 Fangxin Hong
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/RankProd | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: RankProd
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Version: 2.34.0
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Command: rm -rf RankProd.buildbin-libdir && mkdir RankProd.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=RankProd.buildbin-libdir RankProd_2.34.0.tar.gz >RankProd-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=RankProd.buildbin-libdir --install="check:RankProd-install.out" --force-multiarch --no-vignettes --timings RankProd_2.34.0.tar.gz && mv RankProd.buildbin-libdir/* RankProd.Rcheck/ && rmdir RankProd.buildbin-libdir
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StartedAt: 2014-04-05 06:08:39 -0700 (Sat, 05 Apr 2014)
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EndedAt: 2014-04-05 06:09:37 -0700 (Sat, 05 Apr 2014)
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EllapsedTime: 58.6 seconds
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RetCode: 0
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Status: OK
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CheckDir: RankProd.Rcheck
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Warnings: 0
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Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/RankProd.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RankProd/DESCRIPTION' ... OK
* this is package 'RankProd' version '2.34.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RankProd' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'RankProd.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [11s] OK
** running examples for arch 'x64' ... [18s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
RPadvance 6.16 0.01 6.17
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'D:/biocbld/bbs-2.13-bioc/meat/RankProd.Rcheck/00check.log'
for details.
RankProd.Rcheck/00install.out:
install for i386
* installing *source* package 'RankProd' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'RankProd' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'RankProd' as RankProd_2.34.0.zip
* DONE (RankProd)
RankProd.Rcheck/examples_i386/RankProd-Ex.timings:
name | user | system | elapsed
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RP | 1.31 | 0.02 | 1.33 |
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RPadvance | 3.57 | 0.00 | 3.66 |
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RSadvance | 1.79 | 0.00 | 1.80 |
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plotGene | 1.31 | 0.01 | 1.32 |
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plotRP | 1.28 | 0.02 | 1.30 |
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topGene | 1.31 | 0.00 | 1.31 |
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RankProd.Rcheck/examples_x64/RankProd-Ex.timings:
name | user | system | elapsed
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RP | 2.31 | 0.03 | 2.34 |
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RPadvance | 6.16 | 0.01 | 6.17 |
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RSadvance | 3.08 | 0.00 | 3.08 |
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plotGene | 2.05 | 0.00 | 2.06 |
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plotRP | 2.04 | 0.02 | 2.06 |
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topGene | 1.50 | 0.01 | 1.51 |
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