BioC 2.13: CHECK report for PANR on moscato1
This page was generated on 2014-04-05 09:50:27 -0700 (Sat, 05 Apr 2014).
PANR 1.8.0 Xin Wang
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/PANR | Last Changed Rev: 81642 / Revision: 88450 | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | |
moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ OK ] | OK |
perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK |
Summary
Package: PANR
|
Version: 1.8.0
|
Command: rm -rf PANR.buildbin-libdir && mkdir PANR.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=PANR.buildbin-libdir PANR_1.8.0.tar.gz >PANR-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=PANR.buildbin-libdir --install="check:PANR-install.out" --force-multiarch --no-vignettes --timings PANR_1.8.0.tar.gz && mv PANR.buildbin-libdir/* PANR.Rcheck/ && rmdir PANR.buildbin-libdir
|
StartedAt: 2014-04-05 05:40:22 -0700 (Sat, 05 Apr 2014)
|
EndedAt: 2014-04-05 05:42:26 -0700 (Sat, 05 Apr 2014)
|
EllapsedTime: 124.8 seconds
|
RetCode: 0
|
Status: OK
|
CheckDir: PANR.Rcheck
|
Warnings: 0
|
Command output
* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/PANR.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'PANR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'PANR' version '1.8.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'PANR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking for old-style vignette sources ... NOTE
Vignette sources only in 'inst/doc':
'PANR-Vignette.Rnw'
A 'vignettes' directory will be required as from R 3.1.0
* checking examples ...
** running examples for arch 'i386' ... [34s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitNULL 31.32 0.1 31.42
** running examples for arch 'x64' ... [39s] OK
Examples with CPU or elapsed time > 5s
user system elapsed
fitNULL 30.72 0.05 30.76
buildPAN 0.81 0.02 5.69
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
'D:/biocbld/bbs-2.13-bioc/meat/PANR.Rcheck/00check.log'
for details.
PANR.Rcheck/00install.out:
install for i386
* installing *source* package 'PANR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'PANR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'PANR' as PANR_1.8.0.zip
* DONE (PANR)
PANR.Rcheck/examples_i386/PANR-Ex.timings:
name | user | system | elapsed
|
BetaMixture-class | 0.02 | 0.00 | 0.02 |
|
PAN-class | 0 | 0 | 0 |
|
SNR2p | 0 | 0 | 0 |
|
assoScore | 0.02 | 0.00 | 0.01 |
|
buildPAN | 0.79 | 0.03 | 0.89 |
|
cosineSim | 0.02 | 0.00 | 0.02 |
|
data-Bakal2007 | 0.03 | 0.00 | 0.03 |
|
exportPAN | 0 | 0 | 0 |
|
fitBM | 0 | 0 | 0 |
|
fitNULL | 31.32 | 0.10 | 31.42 |
|
infer | 0.56 | 0.00 | 0.56 |
|
p2SNR | 0 | 0 | 0 |
|
permNULL | 0.01 | 0.00 | 0.01 |
|
pvclustModule | 0 | 0 | 0 |
|
sigModules | 0.00 | 0.01 | 0.01 |
|
summarize | 0.01 | 0.00 | 0.02 |
|
view | 0.22 | 0.02 | 0.23 |
|
viewLegend | 0 | 0 | 0 |
|
viewNestedModules | 0 | 0 | 0 |
|
viewPAN | 0 | 0 | 0 |
|
PANR.Rcheck/examples_x64/PANR-Ex.timings:
name | user | system | elapsed
|
BetaMixture-class | 0 | 0 | 0 |
|
PAN-class | 0 | 0 | 0 |
|
SNR2p | 0 | 0 | 0 |
|
assoScore | 0.02 | 0.00 | 0.02 |
|
buildPAN | 0.81 | 0.02 | 5.69 |
|
cosineSim | 0.02 | 0.00 | 0.01 |
|
data-Bakal2007 | 0.01 | 0.00 | 0.02 |
|
exportPAN | 0 | 0 | 0 |
|
fitBM | 0 | 0 | 0 |
|
fitNULL | 30.72 | 0.05 | 30.76 |
|
infer | 0.68 | 0.00 | 0.69 |
|
p2SNR | 0 | 0 | 0 |
|
permNULL | 0.02 | 0.00 | 0.01 |
|
pvclustModule | 0 | 0 | 0 |
|
sigModules | 0 | 0 | 0 |
|
summarize | 0.03 | 0.00 | 0.03 |
|
view | 0.25 | 0.02 | 0.27 |
|
viewLegend | 0 | 0 | 0 |
|
viewNestedModules | 0.02 | 0.00 | 0.01 |
|
viewPAN | 0 | 0 | 0 |
|