HTSeqGenie 3.12.0
Gregoire Pau
| Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/HTSeqGenie | | Last Changed Rev: 81642 / Revision: 88450 | | Last Changed Date: 2013-10-14 14:29:21 -0700 (Mon, 14 Oct 2013) |
| zin1 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | [ ERROR ] | skipped | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | N O T S U P P O R T E D |
| perceval | Mac OS X Snow Leopard (10.6.8) / x86_64 | N O T S U P P O R T E D |
* checking for file ‘HTSeqGenie/DESCRIPTION’ ... OK
* preparing ‘HTSeqGenie’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: ShortRead
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:parallel’:
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following object is masked from ‘package:stats’:
xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, as.vector, cbind, colnames, duplicated, eval, evalq,
get, intersect, is.unsorted, lapply, mapply, match, mget, order,
paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rep.int,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unlist
Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: XVector
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
Loading required package: BiocParallel
Loading required package: hwriter
Loading required package: Cairo
Loading required package: tools
Loading required package: rtracklayer
Loading required package: gmapR
Attaching package: ‘HTSeqGenie’
The following object is masked from ‘package:rtracklayer’:
resource
Warning in class(x) <- c(class(x), "try-warning") :
Setting class(x) to multiple strings ("VRanges", "try-warning", ...); result will no longer be an S4 object
Error: processing vignette ‘HTSeqGenie.Rnw’ failed with diagnostics:
chunk 4 (label = runPipeline)
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function ‘callVariants’ for signature ‘"list"’
Execution halted