BioC 2.13: CHECK report for HTSFilter on moscato1

Package: HTSFilter

Version: 1.2.1

Command: rm -rf HTSFilter.buildbin-libdir && mkdir HTSFilter.buildbin-libdir && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=HTSFilter.buildbin-libdir HTSFilter_1.2.1.tar.gz >HTSFilter-install.out 2>&1 && D:\biocbld\bbs-2.13-bioc\R\bin\R.exe CMD check --library=HTSFilter.buildbin-libdir --install="check:HTSFilter-install.out" --force-multiarch --no-vignettes --timings HTSFilter_1.2.1.tar.gz && mv HTSFilter.buildbin-libdir/* HTSFilter.Rcheck/ && rmdir HTSFilter.buildbin-libdir

StartedAt: 2014-04-05 04:36:31 -0700 (Sat, 05 Apr 2014)

EndedAt: 2014-04-05 04:42:08 -0700 (Sat, 05 Apr 2014)

EllapsedTime: 337.3 seconds

RetCode: 0

Status:  OK

CheckDir: HTSFilter.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.13-bioc/meat/HTSFilter.Rcheck'
* using R version 3.0.3 (2014-03-06)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HTSFilter/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTSFilter' version '1.2.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'HTSFilter' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [61s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
HTSFilter         18.69   0.05   18.75
HTSFilter-package 17.02   0.10   17.13
HTSBasicFilter    17.08   0.02   17.10
** running examples for arch 'x64' ... [62s] OK
Examples with CPU or elapsed time > 5s
                   user system elapsed
HTSFilter-package 19.20   0.08   19.28
HTSFilter         18.94   0.12   19.13
HTSBasicFilter    15.93   0.03   15.95
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK

install for i386

* installing *source* package 'HTSFilter' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'HTSFilter' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'HTSFilter' as HTSFilter_1.2.1.zip
* DONE (HTSFilter)

name	user	system	elapsed
HTSBasicFilter	17.08	0.02	17.10
HTSFilter-package	17.02	0.10	17.13
HTSFilter	18.69	0.05	18.75
normalizeData	0.14	0.00	0.14

name	user	system	elapsed
HTSBasicFilter	15.93	0.03	15.95
HTSFilter-package	19.20	0.08	19.28
HTSFilter	18.94	0.12	19.13
normalizeData	0.10	0.02	0.11