Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.13: BUILD BIN report for GeneSelector on perceval

This page was generated on 2014-04-05 09:52:06 -0700 (Sat, 05 Apr 2014).

Package 291/750HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 2.12.1
Martin Slawski
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/GeneSelector
Last Changed Rev: 88094 / Revision: 88450
Last Changed Date: 2014-03-28 09:54:01 -0700 (Fri, 28 Mar 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: GeneSelector
Version: 2.12.1
Command: rm -rf GeneSelector.buildbin-libdir && mkdir GeneSelector.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GeneSelector_2.12.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GeneSelector.buildbin-libdir
StartedAt: 2014-04-05 05:24:21 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:24:31 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 9.2 seconds
RetCode: 0
Status:  OK 
PackageFile: GeneSelector_2.12.1.tgz
PackageFileSize: 917.6 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GeneSelector.buildbin-libdir GeneSelector_2.12.1.tar.gz'
>>>>>>> 

* installing *source* package ‘GeneSelector’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c kendall.c -o kendall.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c mcfour.c -o mcfour.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c mct.c -o mct.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GeneSelector.so kendall.o mcfour.o mct.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/GeneSelector.buildbin-libdir/GeneSelector/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GeneSelector)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GeneSelector.buildbin-libdir/GeneSelector/libs//GeneSelector.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GeneSelector.buildbin-libdir/GeneSelector/libs//GeneSelector.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GeneSelector.buildbin-libdir/GeneSelector/libs//GeneSelector.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GeneSelector.buildbin-libdir/GeneSelector/libs//GeneSelector.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GeneSelector.buildbin-libdir/GeneSelector/libs//GeneSelector.so"