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BioC 2.13: BUILD BIN report for GSVA on perceval

This page was generated on 2014-04-05 09:52:38 -0700 (Sat, 05 Apr 2014).

Package 333/750HostnameOS / ArchBUILDCHECKBUILD BIN
GSVA 1.10.3
Justin Guinney
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/GSVA
Last Changed Rev: 86675 / Revision: 88450
Last Changed Date: 2014-02-21 07:07:58 -0800 (Fri, 21 Feb 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: GSVA
Version: 1.10.3
Command: rm -rf GSVA.buildbin-libdir && mkdir GSVA.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh GSVA_1.10.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R GSVA.buildbin-libdir
StartedAt: 2014-04-05 05:26:09 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:26:26 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 16.7 seconds
RetCode: 0
Status:  OK 
PackageFile: GSVA_1.10.3.tgz
PackageFileSize: 1.449 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=GSVA.buildbin-libdir GSVA_1.10.3.tar.gz'
>>>>>>> 

* installing *source* package ‘GSVA’ ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c kernel_estimation.c -o kernel_estimation.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c ks_test.c -o ks_test.o
ks_test.c: In function ‘ks_sample’:
ks_test.c:22: warning: unused variable ‘mx_value’
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2 -Wall  -c register_cmethods.c -o register_cmethods.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o GSVA.so kernel_estimation.o ks_test.o register_cmethods.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/GSVA.buildbin-libdir/GSVA/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (GSVA)


>>>>>>> 
>>>>>>> FIXING LINKS FOR GSVA.buildbin-libdir/GSVA/libs//GSVA.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "GSVA.buildbin-libdir/GSVA/libs//GSVA.so"