Back to the "Multiple platform build/check report" A  B  C [D] E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 2.13: BUILD BIN report for DESeq2 on perceval

This page was generated on 2014-04-05 09:53:02 -0700 (Sat, 05 Apr 2014).

Package 200/750HostnameOS / ArchBUILDCHECKBUILD BIN
DESeq2 1.2.10
Michael Love
Snapshot Date: 2014-04-04 16:20:29 -0700 (Fri, 04 Apr 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_13/madman/Rpacks/DESeq2
Last Changed Rev: 86057 / Revision: 88450
Last Changed Date: 2014-02-04 10:03:14 -0800 (Tue, 04 Feb 2014)
zin1 Linux (Ubuntu 12.04.4 LTS) / x86_64  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
perceval Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK [ OK ]

Summary

Package: DESeq2
Version: 1.2.10
Command: rm -rf DESeq2.buildbin-libdir && mkdir DESeq2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh DESeq2_1.2.10.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R DESeq2.buildbin-libdir
StartedAt: 2014-04-05 05:20:20 -0700 (Sat, 05 Apr 2014)
EndedAt: 2014-04-05 05:20:55 -0700 (Sat, 05 Apr 2014)
EllapsedTime: 34.8 seconds
RetCode: 0
Status:  OK 
PackageFile: DESeq2_1.2.10.tgz
PackageFileSize: 1.573 MiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=DESeq2.buildbin-libdir DESeq2_1.2.10.tar.gz'
>>>>>>> 

* installing *source* package ‘DESeq2’ ...
** libs
llvm-g++-4.2 -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/Rcpp/include" -I"/Library/Frameworks/R.framework/Versions/3.0/Resources/library/RcppArmadillo/include"   -fPIC  -mtune=core2 -g -O2 -Wall  -c DESeq2.cpp -o DESeq2.o
llvm-g++-4.2 -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o DESeq2.so DESeq2.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3/x86_64 -L/usr/local/lib/x86_64 -L/usr/local/lib/gcc/i686-apple-darwin8/4.2.3 -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.13-bioc/meat/DESeq2.buildbin-libdir/DESeq2/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (DESeq2)


>>>>>>> 
>>>>>>> FIXING LINKS FOR DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgcc_s.1.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libgfortran.2.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.5.2.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.0/Resources/lib/libreadline.dylib" "DESeq2.buildbin-libdir/DESeq2/libs//DESeq2.so"